Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00510 ATGGAACTTCTCAGGAATTTGTCTTCAAGTGGATTGACCGGGCAGATATCATCTTCCATATCAAAGCTCACCATGCTACAGTACTTGGATTTATCAAACAATAGCTTAAACGGTCCCCTACCTAATTTTCTGATGCAACTGCGGTCACTAAAAGTATTAAACGTGAGGAAGAATAAACTTACAGGGTTAGTTCCAAGCGGACTCCTTGAGAGATCACAAACAAGTTTACTATCACTTAATGTGGATGATAATCCTGAACTTTGTATGACGGAATCCTGCAGAAAGAAGAAATTGTTTGTACCACTTATTACATCGTTTTCGGCATTAATTGTTGTAATCCTCTTGACTTCTCTTGGATTTTGGATATTCAAAAGACAAAAAGAAAAGTGGTCAAATTCTGAGAAAAGTGGTTCAATGAAATCAAAACATCAAAGATTTAGTTACAATGAAATTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATATTGGCATTTTACAAGAACACACTCAAGTTGCTGTTAAGATACTTTCAACATCATCAAAGCAAGGTTATAAGGAATTTAAATCCGAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTATCTCTCCATGGATATTGTGATGAAGGTGAAATCAAAGCCTTGGTATATGAATACATGACCAATGGAAATCTGCAACAACACTTATTTGTGAAAGATACAAATATCTTTAATTGGAATGAGAGACTTAATATCGCAATCGATGCAGCACACGGATTGGATTATCTACATAATGGATGTAAACCACCGATTATGCATAGAGATTTGAAGCCTTCCAACATATTATTAGATGATAAAATGCATGCCAAGATAGCTGATTTTGGTCTAAGTAGAGCTTTGGTTAACGATGTTGATTCTCATATATCCACGCGCCCTGCTGGTACACCAGGTTATATTCATCCCGGATATCGGAGAACAGGAAACACAAATAAGAAAAATGATATCTATAGCTTTGGAGTTATTCTATTTGAGTTGATCACCGGTCGAAAAGCACTAGTAAAAGTATATGATGAATACCTTCACATACTTGAATGGGTTATTCCTATAATTGAAGGAGGAGATATTGAAAATGTTGTTGATTCAAGGTTGCAGGGTGAATTTAGCATCAATTCAGCATGGAAATCTGTAGAGATTGCCATGTCATGCACTTCGCCAAATGTAGTTGAAAGACCGGACATGAGTCTAATATTAGCAGAGTTAAAAGAATGTCTATCTTTGGATATGGTTCAGAGAAACCATGGAAGCCCAAGAGCTGTAGATGAATTGGTTTCTTTAGCTACTGCTCAAGATCATTCAGGATTCATTAGCTTAGACTGTGGTCTACCTGTACATTCAAGCTATTCAGCTTTGGGGACAGGCATAAAATATATTTCAGATGCTGAATTCATAGATACTGGTGTAAGTAAAAAGATACAACCTATAAGCGATACTGAAGTGCTTAGTCAACAGCTACTAGAATATTTGAGGAGTTTTCCTAATGGAGTGAGAAATTGTTACAAAATAAATGTAACAAATGGTACTAAATATTTAATCAGAGCCACTTTCTTTTTTGGTAACTATGATAATCTAAATAAACCACCTCAATTTGATATTCATCTTGGAGCTAATTTATGGGATACAGTGAAGTTCTCCAATGCATCATCAATCTACTGGACGAGGGAGATTATTTACACTCCATCACTAGATTACATACAACCATGTCTTGTTAACATTGGCAAAGGAACTCCACTCATTTCAGCTATTGAACTTAGACCTTTGAACAATACTGCTTATGTCACAAACTCAGCGAAATCAGTATTATCACTCATTGGGAGATCCGATTTAGGTTCCAACGCAGACTTAGGATACAGATACAAAGATGATATTTCAGACCGAATCTGGTCGCCATATGAATTATCCAGTGATTGGAGAAGATTAAGCACCTCAATTAACAATGTTAATCTATCATCTCAGAATCCTTATAAACCACCAGCAATTGTAATGAGCACTGCAGTTACACCTGTAAATGTGAGTGCCCCTTTACATTTTGAATGGGATGCAGATAGTAATGTATATGAACAATACTACCTCTACATACACATATATGACTTTGAAGAGCGGGCAGCCAATGAAACTAGAGAGTTCAATGTCACCTTGAATGGCATGTTTTTCTATGGACCTGTGGTTCTTTTATACCGAGGAGAAGAAAAAGTTGTAGGTAGTACACGTCCCTTACCTGTAAATACTAGGTATCAACTTTCCCTTTCTAAAACAGAGAATTCAACCCTTCCACCCATCATCAATGCTATTGAGATTTTTAAAGTAAAAGACTTCTCACAATCAGAAACGGAACAAAATGATGTTGATGCTATCACAAACATCAAGAATGTTTATGGGATGGCTAGAAATTGGCAAGGAGATCCATGTGTTCCTGTGAATTACATGTGGGAAGGCCTGAACTGTAGTATTGATGGAAATAACATCCCAAGAATCACATCTTTGGATTTATCTCCAAGTGGATTGACCGGGAAGATAGCATCTTCCATCTCAAAGCTCACTATGTTACAATACTTGGATTTGTCAAACAATAGGTTAAATGGTCCCTTACCTGATTTTCTGATACAAATGCATTCACTAAAAGTCTTAAAAGTGGGGAAGAACAAACTTACAGGGTTAGTTCCAAATGAATTCTTTGAGAGATCAAAAACAGGTTCACTATCACTGAGTGTGGATGATAATCCTGATCTTTGTATGAAGAAATCCTGCGCAAGAAAGAACAGTTTGTCTGTACCACTGATTGCATCGTTTTCATCATTAACAGTTGTAATCTTCTTGATTTGTCTTGGAATTTGGATATCCAGAAGACAAAAAGTTACATCCACAATTTCTAAGAAAAGGGGTTCATTGGAATCAAAGCACCAAGCATTCAATTACACTGAAATTCTAAATATTACTGATAACTTCAAAACCATTATCGGAGAAGGAGGATTTGGAAAAGTTTATGTTGGTGTTCTACAAAATCGCACCCAAGTTGCGGTTAAGATACTCTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGATGAAATCAAAGCATTAGTTTATGAATACATGGCCAATGGAAATCTCCAACAACACATATCAGTGAAAAATACAAATATCTTAAAATGGAGTGAGAGACTTAACATTGCAGTTGATTCAGCACAAGGATTGGATTATCTGCATAATGGATGTAAACCACCAATTATGCATAGAGATTTGAAACCATCCAACATATTGCTAGATAATAACATGAATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGATAATGATATTGATTCTCATATATCAACGCGTCCTGCCGGTACACTTGGTTACGCGGCTCCTGAATATCAGAGAACAGGAAACACAAATAAAAAAAATGATGTCTACAGCTTTGGTATAGTTCTATTTGTGTTGATCACCGGCCGTCAAGCAATAGTAAAAGAAGGCGGAGAAAACATTCACATACTTGAATGGGTTATTCCTATAATTGAAGCGGGAGATATTCAAAATGTTGTTGATCCAAGGTTGGAGGGTGAATTTGGCATTAATTCAGCATGGAAAGTTGTAGAGATTGCCATGTCATGCATTTTATCAAATGCAGTGGAAAGGCCAGACATGAGCCTAATATTAGCAGAGTTAAAGGAATGTCTATCTTTGGACATGATTCAAAGAAACTATGGAAGCACAAGAGCTATGGATGAATTGGTTTCTATAGCAACTGTATCAGATACCACTATTTCAGCTAGATAA 3930 0.3613 MELLRNLSSSGLTGQISSSISKLTMLQYLDLSNNSLNGPLPNFLMQLRSLKVLNVRKNKLTGLVPSGLLERSQTSLLSLNVDDNPELCMTESCRKKKLFVPLITSFSALIVVILLTSLGFWIFKRQKEKWSNSEKSGSMKSKHQRFSYNEILNITDNFKTIIGEGGFGKVYIGILQEHTQVAVKILSTSSKQGYKEFKSEAQLLMIVHHRNLVSLHGYCDEGEIKALVYEYMTNGNLQQHLFVKDTNIFNWNERLNIAIDAAHGLDYLHNGCKPPIMHRDLKPSNILLDDKMHAKIADFGLSRALVNDVDSHISTRPAGTPGYIHPGYRRTGNTNKKNDIYSFGVILFELITGRKALVKVYDEYLHILEWVIPIIEGGDIENVVDSRLQGEFSINSAWKSVEIAMSCTSPNVVERPDMSLILAELKECLSLDMVQRNHGSPRAVDELVSLATAQDHSGFISLDCGLPVHSSYSALGTGIKYISDAEFIDTGVSKKIQPISDTEVLSQQLLEYLRSFPNGVRNCYKINVTNGTKYLIRATFFFGNYDNLNKPPQFDIHLGANLWDTVKFSNASSIYWTREIIYTPSLDYIQPCLVNIGKGTPLISAIELRPLNNTAYVTNSAKSVLSLIGRSDLGSNADLGYRYKDDISDRIWSPYELSSDWRRLSTSINNVNLSSQNPYKPPAIVMSTAVTPVNVSAPLHFEWDADSNVYEQYYLYIHIYDFEERAANETREFNVTLNGMFFYGPVVLLYRGEEKVVGSTRPLPVNTRYQLSLSKTENSTLPPIINAIEIFKVKDFSQSETEQNDVDAITNIKNVYGMARNWQGDPCVPVNYMWEGLNCSIDGNNIPRITSLDLSPSGLTGKIASSISKLTMLQYLDLSNNRLNGPLPDFLIQMHSLKVLKVGKNKLTGLVPNEFFERSKTGSLSLSVDDNPDLCMKKSCARKNSLSVPLIASFSSLTVVIFLICLGIWISRRQKVTSTISKKRGSLESKHQAFNYTEILNITDNFKTIIGEGGFGKVYVGVLQNRTQVAVKILSPSSMQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEDEIKALVYEYMANGNLQQHISVKNTNILKWSERLNIAVDSAQGLDYLHNGCKPPIMHRDLKPSNILLDNNMNAKIADFGLSRAFDNDIDSHISTRPAGTLGYAAPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAIVKEGGENIHILEWVIPIIEAGDIQNVVDPRLEGEFGINSAWKVVEIAMSCILSNAVERPDMSLILAELKECLSLDMIQRNYGSTRAMDELVSIATVSDTTISAR 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00510 1309 ProSiteProfiles Protein kinase domain profile. 156 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00510 1309 SUPERFAMILY Protein kinase-like (PK-like) 989 1273 IPR011009 -
Trre16g00510 1309 SMART serkin_6 1004 1277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00510 1309 SMART serkin_6 156 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00510 1309 SUPERFAMILY L domain-like 830 970 - -
Trre16g00510 1309 ProSitePatterns Protein kinases ATP-binding region signature. 162 184 IPR017441 GO:0005524
Trre16g00510 1309 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Trre16g00510 1309 Gene3D Phosphorylase Kinase; domain 1 985 1079 - -
Trre16g00510 1309 Gene3D Ribonuclease Inhibitor 5 104 IPR032675 -
Trre16g00510 1309 Gene3D Ribonuclease Inhibitor 805 975 IPR032675 -
Trre16g00510 1309 Gene3D Transferase(Phosphotransferase) domain 1 1080 1292 - -
Trre16g00510 1309 Gene3D Transferase(Phosphotransferase) domain 1 232 443 - -
Trre16g00510 1309 ProSitePatterns Protein kinases ATP-binding region signature. 1010 1032 IPR017441 GO:0005524
Trre16g00510 1309 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1080 1286 - -
Trre16g00510 1309 FunFam Leucine-rich repeat receptor-like protein kinase 134 231 - -
Trre16g00510 1309 CDD STKc_IRAK 1010 1275 - -
Trre16g00510 1309 Pfam Leucine Rich Repeat 26 44 IPR001611 GO:0005515
Trre16g00510 1309 FunFam Leucine-rich repeat receptor-like kinase 804 937 - -
Trre16g00510 1309 FunFam Leucine-rich repeat receptor-like protein kinase 981 1079 - -
Trre16g00510 1309 SUPERFAMILY L domain-like 6 93 - -
Trre16g00510 1309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1124 1136 IPR008271 GO:0004672|GO:0006468
Trre16g00510 1309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Trre16g00510 1309 ProSiteProfiles Protein kinase domain profile. 1004 1277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00510 1309 Pfam Protein tyrosine and serine/threonine kinase 1006 1272 IPR001245 GO:0004672|GO:0006468
Trre16g00510 1309 Pfam Protein tyrosine and serine/threonine kinase 158 424 IPR001245 GO:0004672|GO:0006468
Trre16g00510 1309 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 232 432 - -
Trre16g00510 1309 Pfam Malectin-like domain 462 793 IPR024788 -
Trre16g00510 1309 SUPERFAMILY Protein kinase-like (PK-like) 133 425 IPR011009 -
Trre16g00510 1309 PANTHER OS07G0107800 PROTEIN-RELATED 460 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00510 Trre-Chr16 3757114 3770988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00510 6 445 Receptor kinase-like Gene Family AT2G19210 45.657 3.94e-126 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00510 Malectin_like 3.7e-104 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00510 - - mtr:25500366 1164.06