Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00509 ATGAGAATGTTACTGCATTTTCTTTTGGTGTTGCTTGTTGTCCTTACTATTTTGGTTTTGGTACAAGCTCAGGATCAATCAGGATTTATTAGCTTAGATTGTGGTCTACCTGAACATTCGAGCTATTCTGCGGTGAAGACAGGAATAAATTACATTTCAGATTCCAAATTCGTTGAGTCTGGTGTAAGTAAGAGAATAAGATATACAAAGGAGATTATTCAACAACAACTACAATATGTGAGGAGCTTTCCTAATGGAGTGAAAAATTGTTACAGAATAAATGTAACAAGTGGTACTAAATATTTAATTAGAGCTTCTTTCTATTATGGAAACTATGATAATCTAAATGATCCACCAATATTTGATCTTCATTTTGGAGCTAATCTGTGGGATACAGTGAAGTTCAGCAATAATGTATCATTCTTCCAAATCAGGGAGATCATTTACACTCCATCGCATGCTTATATACAACCATGTCTTGTTAACACAGGCCAAGGGACTCCATTCGTTTCAGCTATAGAATTAAGAACTTTGAACAATAAAACTTATGTCACAAAATCAGCTAAATCAGTTTTATCACTCTTGGTGCGATGGAATATGGGTTCCATCACCAATTCAGGATACAGGTACAAAGATGATATTTATGACCGCATCTGGTCGCCTTCTTTATTTCTAAGTGATTGGAGACGATTAAGCACCACACTTAAGAATGATGATCTAGGTAAGGAAGATTATGAACTTCCGGCAATTGTGATGAGCACTGCTGTTACACCAGTAAATGTTAGTGCCCCTATACTATTTTATTGGGATGCAGATGTTGTAAATGATCAATACTACCTCTACACACACTTTAATGAGGTTGAGAAACTCGCTGCAAATGAAACTAGAGCGTTCAATATCAAAGTGAATGGAGATCTTTTGTATGGACCTGTGATACCTATATACCGGAAAGCAATTACCATAATTAGTAAAATAGCTTTGACTGAAGCCTCAGTTTATCAAATTACTCTTTCTGAGACAAAGAATTCAACACTTCCACCCATCCTCAATGCCATTGAGGTTTATAAAGTAAAAGACTTCTCACATTCAGAAACTCAACAAGATGAAGTTGATACTATCATAAATATCAAGAATGCTTATGGGGTGACTAGAAATTGGCAAGGAGATCCATGTGCCCCTGAGAGTTACATATGGGAAGGCTTAAAGTGTAGTGTTGATGGCAATAACATGTCAAGAATCACATCATTGGATTTGACTTCAAGTGGATTGACAGGGAAGATAGTATCTTCCATCTCAAAGCTAACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAAATGGTCCCTTACCTGATTTTCTGATACAACTGCATTCACTAAAAGTCTTAAACGTGAGGAAAAACAAACTTACAGGGTTAGTTCCAAGTGAACTTCTTGAGAGATCAAAAACTGGTTCACTATTACTAAGCGTGGATGATAATCCTGGTCTTTGTACAACAAAATCCTGTGGAAAGAAGAGTTTGTTTATACCATTGATTGCATTGTTTTCAGCATTAATTGTTGTAATCCTCTTTATTTGTCTTGGATTTTGGATATTCAGAAGACATAAAGTTACGTCTAAAAATTCTAAGAAAAGGGGATCACTGGAAACAAAACATCAGGCATTCAGTTATACTGAAATTCTCAATATTACTGATAACTTCAAAACTGTTGTTGGAGAAGGAGGATTTGGAAAAGTTTATGTCGGCGTTCTACAAAATCACACCCAAGTTGCAGTTAAGATACTTTCACCATCCTCAATGCAAGGTTATAAGGAATTTCATTCAGAGGCACAACTTCTAATGATTGTACACCATAGACATTTGGTCTCTCTCGTTGGCTATTGTGATGAATATGAAATCAAAGCATTGGTGTATGAATACATGGCCAATGGAAATCTTCAACAACACTTATCAGTGAAAAATACAAATATCTTAAAATGGAATGAGAGGCTTAACATTGCAATTGATGCAGCACACGGATTGGATTATCTGCATAATGGATGTAAACCACCAATTATGCATAGAGATTTGAAGCCTTCCAATATATTACTAGATGAAAACATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCATTTGGTGATGATATTGATTCTCTGTCACGACCCAATCTCTGGTCACGACCGGCGCACAGGCCACCACTACCTAACCCTATATTTAGCCTGGCAAGCCTAATACACTATAGCAGATATACCAATTTAAAGTACATAGTTATTGAAATTACAGCTCGACAGAAGAATCTTTGGTCCTACGTATCCCTAAACGATTAG 2340 0.3611 MRMLLHFLLVLLVVLTILVLVQAQDQSGFISLDCGLPEHSSYSAVKTGINYISDSKFVESGVSKRIRYTKEIIQQQLQYVRSFPNGVKNCYRINVTSGTKYLIRASFYYGNYDNLNDPPIFDLHFGANLWDTVKFSNNVSFFQIREIIYTPSHAYIQPCLVNTGQGTPFVSAIELRTLNNKTYVTKSAKSVLSLLVRWNMGSITNSGYRYKDDIYDRIWSPSLFLSDWRRLSTTLKNDDLGKEDYELPAIVMSTAVTPVNVSAPILFYWDADVVNDQYYLYTHFNEVEKLAANETRAFNIKVNGDLLYGPVIPIYRKAITIISKIALTEASVYQITLSETKNSTLPPILNAIEVYKVKDFSHSETQQDEVDTIINIKNAYGVTRNWQGDPCAPESYIWEGLKCSVDGNNMSRITSLDLTSSGLTGKIVSSISKLTMLQYLDLSNNSLNGPLPDFLIQLHSLKVLNVRKNKLTGLVPSELLERSKTGSLLLSVDDNPGLCTTKSCGKKSLFIPLIALFSALIVVILFICLGFWIFRRHKVTSKNSKKRGSLETKHQAFSYTEILNITDNFKTVVGEGGFGKVYVGVLQNHTQVAVKILSPSSMQGYKEFHSEAQLLMIVHHRHLVSLVGYCDEYEIKALVYEYMANGNLQQHLSVKNTNILKWNERLNIAIDAAHGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGDDIDSLSRPNLWSRPAHRPPLPNPIFSLASLIHYSRYTNLKYIVIEITARQKNLWSYVSLND 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00509 779 SUPERFAMILY L domain-like 397 489 - -
Trre16g00509 779 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Trre16g00509 779 SMART serkin_6 567 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00509 779 Gene3D Phosphorylase Kinase; domain 1 548 642 - -
Trre16g00509 779 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Trre16g00509 779 Pfam Malectin-like domain 32 357 IPR024788 -
Trre16g00509 779 PANTHER OS07G0107800 PROTEIN-RELATED 30 713 - -
Trre16g00509 779 FunFam Os07g0541700 protein 643 726 - -
Trre16g00509 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Trre16g00509 779 ProSiteProfiles Protein kinase domain profile. 567 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00509 779 FunFam Leucine-rich repeat receptor-like protein kinase 544 642 - -
Trre16g00509 779 SUPERFAMILY Protein kinase-like (PK-like) 549 723 IPR011009 -
Trre16g00509 779 Pfam Protein tyrosine and serine/threonine kinase 569 718 IPR001245 GO:0004672|GO:0006468
Trre16g00509 779 Gene3D Transferase(Phosphotransferase) domain 1 643 739 - -
Trre16g00509 779 FunFam Leucine-rich repeat receptor-like kinase 368 501 - -
Trre16g00509 779 Gene3D Ribonuclease Inhibitor 371 488 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00509 Trre-Chr16 3752152 3755875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00509 15 722 Receptor kinase-like Gene Family AT2G19230 48.472 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00509 Malectin_like 1.4e-106 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00509 - - mtr:25500366 978.008