Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00508 ATGATGAGAATGTCGTTGCGTTTTCTTTCGGTATTGCTTGGTGTCCTTGCTCTTTTGGATTTGATACAAGCTCAGGATCAATCAGGATTCACTAGCATAGATTGTGGCTTACCTGAAAATTCAGACTACACCGAGAAGATCACAGACATAAATTACATATCAGATGCCAAATTCATTGATACAGGTGTAAGTAAGAGTATATCACCTGCACAGATGATTACTCATCAACAACAACTACATTTTGTAAGGAGCTTTCCTAGCGGAGTGAGAAACTGTTATAGAATAAATGTAAACATTGGTACTCAATATTTAATCAGAGCTACTTTCTATTATGGAAACTATGATGGTCTAAATAAGCCACCACAATTTGAACTTTATTTTGGAGTTAATGTGTGGGATACAGTGAAGTTCCCTAATGCATCACGCACCATAATGAGTGAGATCATTTACATTCCATCAAAAGATTACATACAACCATGCCTTGTTAACACTGGCAAAGGGACTCCTTTCATTTCAGCAATAGAATTGAGGCCTTTGAACAATAATTCTTATATCAACAACGCAGAGTCAGATAAACCAGTATTATCACTCTTCATGAGATATGATTTGGGTTCCATTACAAACTTAGAATACAGGTACAAAGATGATGTTTATGACCGCATTTGGTTGCCCTATGAATCTAGTGATTGGAGACGATTAACCACCTCACTTAGCAATGATGAACTACATCAGAATACTTATAAACCACCAGCAATTGTGATGAGCACTGCTGTTACACCAATAAATGCCAGTGCCCCTTTACAATTTCAATGGGATGCAGATGATGTAAATGATCAGTACTACATCTACAGGCACTTTAATGAGGTTAAGGAGTTGGCAGCAAATGAAACTAGAGCGTTCAATATGATAGTGAGTGCATACAATTGGTATGGACCCGTGACGCCTCAATTTGGGGTAACAAATACCATATTTAGTACAAAACCTTTGACTGGAGCCACAAGGTATCAAGTTTCCCTTTCTAAGACAAAAAATTCAACCCTTCCACCCATTATCAATGCCATTGAGATTTATAAAGTAAAAGACTTCTCACAATTAGAAACAGAACAAGATGATGTTGATACTATCACAACCATCAAGAATGCTTATGGGGTAGCTAGAAATTGGCAAGGTGATCCATGTGGTCCTGCAAAGTATATGTGGGAAGGCCTAAATTGCAATTTTGATGGCTTTAATCCCCCAAGAATCACATCTTTGAATTTGTCATCAAGTGGACTGACAGGGCAGATACATTATTCCTTATCAAAGCTCACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAAACGGTCCCTTACCTGATTTTTTGAACAAGCTTGAGTCACTAAAAGTCTTAAACTTGGATAAGAACAAACTTACAGGGTTAGTTCCACGTGAACTCCTTGAGAGATCAAAAACAGATTCACTATCACTTAGCGTGGATGATAATCCTGGTCTTTGTACGAAGAAATCATGTGGAAAGAAGAGTTTGTTTGTACCATTGATTGCATCATTTTCAGCATTATTTGTTGTAATCCTCTTTATTTGTATTGGATTTTGGATATTCAGAAGACATGAAGTTACGTCTAGAAATTCTAGGAAAAGGGGTTCACTGATATCAAAACAGCAGGCATTCAATTACACTGAAATTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGTGGATTTGGAAAAGTTTACTTAGGCACACTACAAGATCAAACTCAAGTCGCTGTTAAGAGGCTTTCACCATCATCAGTGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATCTGGTCTCTCTCATTGGATATTGTGATGAAGATGAAATCAAAGCATTGGTTTATGAATACATGGCCAATGGAAATCTCCAACAACACTTGTCAGTGAAAAATACAAATATCTTAAAATGGAATGAGAGGCTTAACATTGCAGTTGATGCAGCACATGGATTGGAATATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCTTCCAACATACTACTAGATGACAACATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTAATGATATTGATTCTCATATATCAACGCGCCCTGCCGGTACACTTGGTTACGTTGATCCTGAATATCAGAGAACAGGAAACACAAATAAAAAAAATGATGTGTATAGCTTTGGGATAGTTCTATTTGTGTTGATCACTGGTCGTCAAGCAATATTAAGAGAAAATGGAGAAAACTATCACATACTTAAATGGGCTGTTCCCATAATTGAAAGTGGAGATATTCAAGATGTTGTTGATCCAAGGTTGCAGGGTGAATTTAGCATCAATTCAGCATGGAAAGCTGTAGAGATTGCTATGTCTTGCACTTCACCAAATGCAGATGAAAGGCCTGACATGAGCCAAATATTAGCAGATTTAAAGGAATGTCTATCTTTGGAAATGGTTCAGAGAACGTACTGTGGAAGCACAAGAGATAAAGATGAATTGATCTCTGCAGCAACCATATCAGAAACCACTCTTTTAGCTAGATAA 2628 0.3687 MMRMSLRFLSVLLGVLALLDLIQAQDQSGFTSIDCGLPENSDYTEKITDINYISDAKFIDTGVSKSISPAQMITHQQQLHFVRSFPSGVRNCYRINVNIGTQYLIRATFYYGNYDGLNKPPQFELYFGVNVWDTVKFPNASRTIMSEIIYIPSKDYIQPCLVNTGKGTPFISAIELRPLNNNSYINNAESDKPVLSLFMRYDLGSITNLEYRYKDDVYDRIWLPYESSDWRRLTTSLSNDELHQNTYKPPAIVMSTAVTPINASAPLQFQWDADDVNDQYYIYRHFNEVKELAANETRAFNMIVSAYNWYGPVTPQFGVTNTIFSTKPLTGATRYQVSLSKTKNSTLPPIINAIEIYKVKDFSQLETEQDDVDTITTIKNAYGVARNWQGDPCGPAKYMWEGLNCNFDGFNPPRITSLNLSSSGLTGQIHYSLSKLTMLQYLDLSNNSLNGPLPDFLNKLESLKVLNLDKNKLTGLVPRELLERSKTDSLSLSVDDNPGLCTKKSCGKKSLFVPLIASFSALFVVILFICIGFWIFRRHEVTSRNSRKRGSLISKQQAFNYTEILNITDNFKTIIGEGGFGKVYLGTLQDQTQVAVKRLSPSSVQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEDEIKALVYEYMANGNLQQHLSVKNTNILKWNERLNIAVDAAHGLEYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRAFGNDIDSHISTRPAGTLGYVDPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAILRENGENYHILKWAVPIIESGDIQDVVDPRLQGEFSINSAWKAVEIAMSCTSPNADERPDMSQILADLKECLSLEMVQRTYCGSTRDKDELISAATISETTLLAR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00508 875 Pfam Protein tyrosine and serine/threonine kinase 571 838 IPR001245 GO:0004672|GO:0006468
Trre16g00508 875 FunFam Leucine-rich repeat receptor-like protein kinase 546 644 - -
Trre16g00508 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Trre16g00508 875 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Trre16g00508 875 FunFam Leucine-rich repeat receptor-like kinase 370 503 - -
Trre16g00508 875 ProSiteProfiles Protein kinase domain profile. 569 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00508 875 Gene3D Transferase(Phosphotransferase) domain 1 645 858 - -
Trre16g00508 875 SMART serkin_6 569 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00508 875 CDD STKc_IRAK 575 840 - -
Trre16g00508 875 SUPERFAMILY L domain-like 398 493 - -
Trre16g00508 875 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 645 851 - -
Trre16g00508 875 PRINTS Leucine-rich repeat signature 460 473 - -
Trre16g00508 875 PRINTS Leucine-rich repeat signature 439 452 - -
Trre16g00508 875 Pfam Malectin-like domain 33 359 IPR024788 -
Trre16g00508 875 SUPERFAMILY Protein kinase-like (PK-like) 550 838 IPR011009 -
Trre16g00508 875 PANTHER OS07G0107800 PROTEIN-RELATED 31 842 - -
Trre16g00508 875 Gene3D Phosphorylase Kinase; domain 1 541 644 - -
Trre16g00508 875 Gene3D Ribonuclease Inhibitor 373 493 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00508 Trre-Chr16 3742486 3747507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00508 4 843 Receptor kinase-like Gene Family AT2G19210 45.955 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00508 Malectin_like 5.8e-112 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00508 - - mtr:25500366 1195.26