Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00507 ATGAAGCAAACAAAAATGATGAGAATGTCGTTGCGTTTTCTTTCGGTATTGCTTGGTGTCCTTGCTCTTTTGGATTTGATACAAGCTCAGGATCAATCAGGATTCACTAGCATAGATTGTGGCTTACCTGAAAATTCAGACTACACCGAGAAGATCACAGACATAAATTACATATCAGATGCCAAATTCATTGATACAGGTGTAAGTAAGAGTATATCACCTGCACAGATGATTACTCATCAACAACAACTACATTTTGTAAGGAGCTTTCCTAGCGGAGTGAGAAACTGTTATAGAATAAATGTAAACATTGGTACTCAATATTTAATCAGAGCTACTTTCTATTATGGAAACTATGATGGTCTAAATAAGCCACCACAATTTGAACTTTATTTTGGAGTTAATGTGTGGGATACAGTGAAGTTCCCTAATGCATCACGCACCATAATGAGTGAGATCATTTACATTCCATCAAAAGATTACATACAACCATGCCTTGTTAACACTGGCAAAGGGACTCCTTTCATTTCAGCAATAGAATTGAGGCCTTTGAACAATAATTCTTATATCAACAACGCAGAGTCAGATAAACCAGTATTATCACTCTTCATGAGATATGATTTGGGTTCCATTACAAACTTAGAATACAGGTACAAAGATGATGTTTATGACCGCATTTGGTTGCCCTATGAATCTAGTGATTGGAGACGATTAACCACCTCACTTAGCAATGATGAACTACATCAGAATACTTATAAACCACCAGCAATTGTGATGAGCACTGCTGTTACACCAATAAATGCCAGTGCCCCTTTACAATTTCAATGGGATGCAGATGATGTAAATGATCAGTACTACATCTACAGGCACTTTAATGAGGTTAAGGAGTTGGCAGCAAATGAAACTAGAGCGTTCAATATGATAGTGAGTGCATACAATTGGTATGGACCCGTGACGCCTCAATTTGGGGTAACAAATACCATATTTAGTACAAAACCTTTGACTGGAGCCACAAGGTATCAAGTTTCCCTTTCTAAGACAAAAAATTCAACCCTTCCACCCATTATCAATGCCATTGAGATTTATAAAGTAAAAGACTTCTCACAATTAGAAACAGAACAAGATGATGTTGATACTATCACAACCATCAAGAATGCTTATGGGGTAGCTAGAAATTGGCAAGGTGATCCATGTGGTCCTGCAAAGTATATGTGGGAAGGCCTAAATTGCAATTTTGATGGCTTTAATCCCCCAAGAATCACATCTTTGAATTTGTCATCAAGTGGACTGACAGGGCAGATACATTATTCCTTATCAAAGCTCACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAAACGGTCCCTTACCTGATTTTTTGAACAAGCTTGAGTCACTAAAAGTCTTAAACTTGGATAAGAACAAACTTACAGGGTTAGTTCCACGTGAACTCCTTGAGAGATCAAAAACAGATTCACTATCACTTAGCGTGGATGATAATCCTGGTCTTTGTACGAAGAAATCATGTGGAAAGAAGAGTTTGTTTGTACCATTGATTGCATCATTTTCAGCATTATTTGTTGTAATCCTCTTTATTTGTATTGGATTTTGGATATTCAGAAGACATGAAGTTACGTCTAGAAATTCTAGGAAAAGGGGTTCACTGATATCAAAACAGCAGGCATTCAATTACACTGAAATTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGTGGATTTGGAAAAGTTTACTTAGGCACACTACAAGATCAAACTCAAGTCGCTGTTAAGAGGCTTTCACCATCATCAGTGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATCTGGTCTCTCTCATTGGATATTGTGATGAAGATGAAATCAAAGCATTGGTTTATGAATACATGGCCAATGGAAATCTCCAACAACACTTGTCAGTGAAAAATACAAATATCTTAAAATGGAATGAGAGGCTTAACATTGCAGTTGATGCAGCACATGGATTGGAATATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCTTCCAACATACTACTAGATGACAACATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTAATGATATTGATTCTCATATATCAACGCGCCCTGCCGGTACACTTGGTTACGTTGATCCTGAATATCAGAGAACAGGAAACACAAATAAAAAAAATGATGTGTATAGCTTTGGGATAGTTCTATTTGTGTTGATCACTGGTCGTCAAGCAATATTAAGAGAAAATGGAGAAAACTATCACATACTTAAATGGGCTGTTCCCATAATTGAAAGTGGAGATATTCAAGATGTTGTTGATCCAAGGTTGCAGGGTGAATTTAGCATCAATTCAGCATGGAAAGCTGTAGAGATTGCTATGTCTTGCACTTCACCAAATGCAGATGAAAGGCCTGACATGAGCCAAATATTAGCAGATTTAAAGGAATGTCTATCTTTGGAAATGGTTCAGAGAACGTACTGTGGAAGCACAAGAGATAAAGATGAATTGATCTCTGCAGCAACCATATCAGAAACCACTCTTTTAGCTAGATAA 2643 0.3681 MKQTKMMRMSLRFLSVLLGVLALLDLIQAQDQSGFTSIDCGLPENSDYTEKITDINYISDAKFIDTGVSKSISPAQMITHQQQLHFVRSFPSGVRNCYRINVNIGTQYLIRATFYYGNYDGLNKPPQFELYFGVNVWDTVKFPNASRTIMSEIIYIPSKDYIQPCLVNTGKGTPFISAIELRPLNNNSYINNAESDKPVLSLFMRYDLGSITNLEYRYKDDVYDRIWLPYESSDWRRLTTSLSNDELHQNTYKPPAIVMSTAVTPINASAPLQFQWDADDVNDQYYIYRHFNEVKELAANETRAFNMIVSAYNWYGPVTPQFGVTNTIFSTKPLTGATRYQVSLSKTKNSTLPPIINAIEIYKVKDFSQLETEQDDVDTITTIKNAYGVARNWQGDPCGPAKYMWEGLNCNFDGFNPPRITSLNLSSSGLTGQIHYSLSKLTMLQYLDLSNNSLNGPLPDFLNKLESLKVLNLDKNKLTGLVPRELLERSKTDSLSLSVDDNPGLCTKKSCGKKSLFVPLIASFSALFVVILFICIGFWIFRRHEVTSRNSRKRGSLISKQQAFNYTEILNITDNFKTIIGEGGFGKVYLGTLQDQTQVAVKRLSPSSVQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEDEIKALVYEYMANGNLQQHLSVKNTNILKWNERLNIAVDAAHGLEYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRAFGNDIDSHISTRPAGTLGYVDPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAILRENGENYHILKWAVPIIESGDIQDVVDPRLQGEFSINSAWKAVEIAMSCTSPNADERPDMSQILADLKECLSLEMVQRTYCGSTRDKDELISAATISETTLLAR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00507 880 PRINTS Leucine-rich repeat signature 444 457 - -
Trre16g00507 880 PRINTS Leucine-rich repeat signature 465 478 - -
Trre16g00507 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Trre16g00507 880 SUPERFAMILY L domain-like 403 498 - -
Trre16g00507 880 Gene3D Phosphorylase Kinase; domain 1 546 649 - -
Trre16g00507 880 Gene3D Transferase(Phosphotransferase) domain 1 650 863 - -
Trre16g00507 880 Gene3D Ribonuclease Inhibitor 378 498 IPR032675 -
Trre16g00507 880 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 650 856 - -
Trre16g00507 880 FunFam Leucine-rich repeat receptor-like kinase 375 508 - -
Trre16g00507 880 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Trre16g00507 880 SUPERFAMILY Protein kinase-like (PK-like) 555 843 IPR011009 -
Trre16g00507 880 FunFam Leucine-rich repeat receptor-like protein kinase 551 649 - -
Trre16g00507 880 Pfam Protein tyrosine and serine/threonine kinase 576 843 IPR001245 GO:0004672|GO:0006468
Trre16g00507 880 PANTHER OS07G0107800 PROTEIN-RELATED 36 847 - -
Trre16g00507 880 Pfam Malectin-like domain 38 364 IPR024788 -
Trre16g00507 880 SMART serkin_6 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00507 880 ProSiteProfiles Protein kinase domain profile. 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00507 880 CDD STKc_IRAK 580 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00507 Trre-Chr16 3742486 3747522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00507 9 848 Receptor kinase-like Gene Family AT2G19210 45.955 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00507 Malectin_like 5.9e-112 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00507 - - mtr:25500366 1197.96