Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00506 ATGGAAAGAGAATCACCACGGATTAACAACATCGGCAAATCTGTTTCAAGAGAAATTGCTAACAATGAAAATCCAGGTTTTATAAGCATTGATTGTGGATCAAAAACTGATTTGTTAGACGATAGTGGAATTCGGTATACAACAGATGAAGGATTTGTGGAAACAGGACAAAATCATCAGACTTCGCCAGATAGTGACTTTCTTGATGATTATCGCCAATCCCATATTGGGAAACAATTGACCACATTAAGATGTTTTCCAGATGGAGTTAGAAACTGCTACACGTTGAAACCAAAAGAGGGAAAAGATAATAGATATCTCATCAGGGCTTTCTTTTCATATGGTAATTATGATGGCAAAAGTGAAACCCAGTCTTTTGAACTGCATGTTGGAGTCAATCTTTGGAAAAAAATTAATTATACAACTGATACTGATTATCAAGTTACGGAGATAATTTACACTTCTTCAACTGACACTATAAATGTGTGCCTTGTAAAGACTGATTCCACAATCCCATGTATTTCTACATTGGAATTGAGACATTTGAGCAGCCCAATTTATCAGAATCAGATAATTTCCACCAATGACAATGCTCCACTACCTCTTCTGTATATGAATCTTAGGTTTGATATTGGCCCCTCCTGCGGTAATATCACGTTCTCCAGGTATAAAGACGACATATATGATCGGATATGGAGGTGCGACTCTGATGACAAGGATTGGCATCCGTCTAGTTTGGAAGAATCAATAAATATGGATCTCGAAACCAATAATGATGCATATAAATTACCGGCCCAAGCATTGAGAGGTGCAGCCCAACCACTTATCAATATTTCATACATGACATTTACCTATGATGACGAGTTTGAAACACCCCTAGACAAAATTTATGATTATTATGTTTACTTTCACTTTATGGAAATTGAGAAACTTTCAGATGGTAAAAAAAGAAAAATAAATATCACCCTCAACTCCCAAAATGTACTATCTCAGCCTTTAATTCTTGATTACTTGAAGCCTGTTACACTCAACTTCACAACTCAAGGTGGCGTTTTGTTTAACATTAGCGCAACCTCGGATTCTGATGCTCCTCCTTTACTCACTGCCTTCGAGATCTATAAATTGGTGAACCAACTTGATTCGCCAACAGAGGCTCAAGATGTTGCTGCAATCATGGATATCAAAAGGTACTACGAGATCAATAAATTAAGCTGGCAAGGAGACCCTTGTGTTCCTAAGCTATATGCATGGGAAGACCTAGTTTGCAACACCATTCCAAGGATCACATCTTTGAACCTGAGCTCAAGCAAACTAAGAGGGGAGATCAATATTTCGTTCTCATATCTCACGGAACTAGAATTGTTGGATTTGTCACACAATGAGTTGGAAGGACATTTGCCTGAATTTCTGGCACATATGCCAAAGTTAAGAGTTCTTAATCTAACAGGAAACAAGCTTTCGGGTCCAATTCCGAATGCTCTCAAGCAAATGGCAGAAGGATCTTTGCAACTAAGTGTGGATGGCAATCCTGGTATTTGTATGACGGGTTCATGCAAAAAGAAGAACATCAGTGTGCCACTTGTTGCATCACTTTCGGCATTAATTGTTACCATTTTGATCTTCCTAGGATTTTGGATATTCAAAAGACGAAAAGCGGTGCTTTCATATTCTAAGATGAAATCAAAACATCAAGCATTCAGTTACACTGAACTTGTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTAGGCACACTACAAGATCAAACTCAAGTAGCTGTTAAGATGCTTTCACCATCGTCAATGCAAGGTTATAGAGAATTTCAATCTGAGGCACAACTTCTAACGGTTGTTCATCATAGAAATTTGGTCTCTCTTATTGGATATTGTGATGAAGGTGAAGTCAAAGCATTGATTTATGAGTACATGGCGAATGGAAATCTCCAAGAACATCTATCAGAGGAAAAACAAGATATCTTAAGTTGGAATGGGAGACTTAAAATTGCAGTTGATGCTGCACATGGATTGGAGTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCAGCCAACATACTACTAGATGAGAACTTGCAAGCAAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTAATGACAATGATTCTCATATATCCACACGCCCTGCTGGTACATTTGGTTACGTTGATCCAGAATTTCAAAGAACAGGAAACGCAAATAAGAAGAATGATATCTACAGCTTCGGGATAATTCTATTTGTTTTGATCACCGGAAAGAAAGCAGTAGTAAAAGTATCTGAAGAACACATTCACATACTTCAATGGGTTATTCCCATTATTAAAGGAGGAGATATTCAAAACATTGTTGATTCGAGGTTGCAGGGTGAATTCAGCATCAATTCAGCATGGAACATTGTTGAGATAGCCATGTCATGCATTTCACAAAATGCGGTTGAAAGGCCGGACATTAGTCAAATATTGGTAGAGCTAAATGAATGTCTATCTTTGGATATGGTTCGGAGCAATAGTGAAAGCACAAGAGATATAATTGAAATGACTTATTTATCTGTTGAATCAGACACTACTCCATTAGCTAGGTAA 2646 0.3738 MERESPRINNIGKSVSREIANNENPGFISIDCGSKTDLLDDSGIRYTTDEGFVETGQNHQTSPDSDFLDDYRQSHIGKQLTTLRCFPDGVRNCYTLKPKEGKDNRYLIRAFFSYGNYDGKSETQSFELHVGVNLWKKINYTTDTDYQVTEIIYTSSTDTINVCLVKTDSTIPCISTLELRHLSSPIYQNQIISTNDNAPLPLLYMNLRFDIGPSCGNITFSRYKDDIYDRIWRCDSDDKDWHPSSLEESINMDLETNNDAYKLPAQALRGAAQPLINISYMTFTYDDEFETPLDKIYDYYVYFHFMEIEKLSDGKKRKINITLNSQNVLSQPLILDYLKPVTLNFTTQGGVLFNISATSDSDAPPLLTAFEIYKLVNQLDSPTEAQDVAAIMDIKRYYEINKLSWQGDPCVPKLYAWEDLVCNTIPRITSLNLSSSKLRGEINISFSYLTELELLDLSHNELEGHLPEFLAHMPKLRVLNLTGNKLSGPIPNALKQMAEGSLQLSVDGNPGICMTGSCKKKNISVPLVASLSALIVTILIFLGFWIFKRRKAVLSYSKMKSKHQAFSYTELVNITDNFKTIIGEGGFGKVYLGTLQDQTQVAVKMLSPSSMQGYREFQSEAQLLTVVHHRNLVSLIGYCDEGEVKALIYEYMANGNLQEHLSEEKQDILSWNGRLKIAVDAAHGLEYLHNGCKPPIMHRDLKPANILLDENLQAKIADFGLSRAFGNDNDSHISTRPAGTFGYVDPEFQRTGNANKKNDIYSFGIILFVLITGKKAVVKVSEEHIHILQWVIPIIKGGDIQNIVDSRLQGEFSINSAWNIVEIAMSCISQNAVERPDISQILVELNECLSLDMVRSNSESTRDIIEMTYLSVESDTTPLAR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00506 881 Pfam Malectin-like domain 30 374 IPR024788 -
Trre16g00506 881 FunFam Leucine-rich repeat receptor-like kinase 386 515 - -
Trre16g00506 881 Pfam Leucine rich repeat 426 486 IPR001611 GO:0005515
Trre16g00506 881 PANTHER OS07G0107800 PROTEIN-RELATED 28 853 - -
Trre16g00506 881 Pfam Protein tyrosine and serine/threonine kinase 578 844 IPR001245 GO:0004672|GO:0006468
Trre16g00506 881 SUPERFAMILY L domain-like 424 497 - -
Trre16g00506 881 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Trre16g00506 881 CDD STKc_IRAK 582 847 - -
Trre16g00506 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Trre16g00506 881 FunFam Leucine-rich repeat receptor-like protein kinase 554 651 - -
Trre16g00506 881 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 652 858 - -
Trre16g00506 881 Gene3D Phosphorylase Kinase; domain 1 557 651 - -
Trre16g00506 881 SUPERFAMILY Protein kinase-like (PK-like) 555 845 IPR011009 -
Trre16g00506 881 ProSiteProfiles Protein kinase domain profile. 576 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00506 881 Gene3D Transferase(Phosphotransferase) domain 1 652 869 - -
Trre16g00506 881 SMART serkin_6 576 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00506 881 Gene3D Ribonuclease Inhibitor 388 512 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00506 Trre-Chr16 3722143 3738347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00506 26 881 Receptor kinase-like Gene Family AT2G19210 40.590 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00506 Malectin_like 6e-76 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00506 - - mtr:25500358 1182.55