Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00504 ATGTTACTGCATTTTCTTTCAGTATTGTTTGGTGTCATTACTATTTTTGTTTTGATAGAAGCTCAAGAACCAGGATTCATTAGTTTAGATTGTGGTCTACCTGAAGATTCTACCTATTCTGAGCAGATTACAGACATAAATTACATATCTGATGCCAAATTCATTGATACAGGTGTTAGTGAGAGGGTTCGAGCCAATATTACTGTTAAACGACAACTAGAATATGTGAGGAGTTTTCCTATTGGAATGAAAAATTGTTACAGAATAGATGTAACAAATGGTACTAAATATTATATCAGAGCTTCTTTCTATTATGGTAACTATGATGGTTTAAATGATCCACCACAATTTGATCTTACTTTTGGAGCTAATGTTTGGGATACAGTGTCATTCAGCAATTTATCTAGCATCGAAACTAGTGAGATCATTTACACTCCATCACAAGATTACATACAACCATGTCTTGTTAATATAGGCGAAGGGACTCCATTCATTTCATCTATAGAATTGAGGCCTTTGAACAAAGAAACTTATGTTTCATATTCAGAAAAATCAATATTATCATTCTTCTTTCGGTTTGATGTAGGTTCCATCACAAAGATAGAATACAGGTACAAAGACGATGTTTATGATCGCATCTGGTTACCTTTTCAGTGGAATAATGTGAAACAATTAAGCACAGATGATGATCTATTAACTCAGAATGTTTATCAACCACCAGCAATTGTTATGAAAACTGCTGTTACACCAGTAAATGACAGTGCCCCTGTACAATTTAATTTTAATGCGGATACTGTAAATGAGCAAATCTACACATATTTGCACTTTAATGAGGTTGAAAAGCTGGCGGAAAATGAAACTAGAGCATTCAACATCAAAGTGAATGGAGAGCTTTTGTATGATCTTGTGGTACCTGTATACCGATCAGCCGATACCATATTTAGTCCAATACCTTTGACTGGAGCCACAAAATATACATTTACCCTTACTAAGACAGAGAATTCAACCCATCCACCCATCCTCAATGGCATTGAGGTTTATACAGTAAAAAACTTCTCACAATCTGAAACTCAACAGGATGATGTTGATACTATCACAAACATCAAGAAAGCTTATGGAGTGGCTAAAAATTGGCAAGGAGATCCATGTGGTCCTATCAAGTATATATGGGAAGGCCTAAACTGTAGTATTGATGATGGCAATAAACCTCCAAGAATCACATCTTTGAATTTGTCTTCAAGTGGATTGACAGGAGAGATAGCATCTGCCATATCAAACCTCACAAAGTTACAATACTTGGATTTATCAAATAATAGCTTAAACGGTCCTTTACCGGATTTCCTTACGCAACTGCAATCACTAAAAGTCTTAAATGTGAGCAAGAACAATCTTACAGGGTTAGTTTCAAGTGGACTCCTAGAGAGATCAAAAGCAGGTTCTTTATCACTAATTATGGAAGATAACCCTGGTCTTTGTACACCAGAATCATGCAAGGAGAATAAGAAGAAGAAGAAGAAGAATTTGTCTGTACCACTTATTGCATCATTTTCAGCATTAATTGTAATCCTCGTGATTTCTCTTGGACTTTGGAGATTCAAAAGACAAAAAGCTACGCCTACGCCTGTGTCTTCAAATTCTAAGAAAAAGGGTCCCATGAAAACAAAACATCAAGCATTCAGTTACACTGAACTTGTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTAGGCACTTTAGAAGATCATACTCAAGTAGCTGTTAAGAGGCTTTCGCCTTCATCAGTACAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAACGATAGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGGTGAAACCAAAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCAACAACTCTTATTAGTGGAAAATTCAAATATCTTAAAATGGAATGAGAGACTAAACATTGCAGTTGATGCAGCACATGGACTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCTTCCAACATATTACTAGATGATAACATGCATGCCAAGATTGCCGATTTTGGTCTAAGTAGAACTTTTAACGATAATGATACTCATATATCAACGCGCCTTGCTGGTACATTTGGTTACATTGATCCTGAATGCCAGAGAACAGGAAACACAAATAAAATAAATGATATCTATAGCTTTGGAATAATTCTATTTGTGTTGATCACGGGACGTCAAGCAATAGTAAGAACGGCTGAACAAAGCATTCACATACTTGAATGGGTTACTCCTATAATCAGAGCAGGTGATATTCAAAATGTTGTTGATCCAAAGTTGAAGGGTGAATTCAACATCAGTTCGATCTGCATGGAAAATAGTTGA 2445 0.3554 MLLHFLSVLFGVITIFVLIEAQEPGFISLDCGLPEDSTYSEQITDINYISDAKFIDTGVSERVRANITVKRQLEYVRSFPIGMKNCYRIDVTNGTKYYIRASFYYGNYDGLNDPPQFDLTFGANVWDTVSFSNLSSIETSEIIYTPSQDYIQPCLVNIGEGTPFISSIELRPLNKETYVSYSEKSILSFFFRFDVGSITKIEYRYKDDVYDRIWLPFQWNNVKQLSTDDDLLTQNVYQPPAIVMKTAVTPVNDSAPVQFNFNADTVNEQIYTYLHFNEVEKLAENETRAFNIKVNGELLYDLVVPVYRSADTIFSPIPLTGATKYTFTLTKTENSTHPPILNGIEVYTVKNFSQSETQQDDVDTITNIKKAYGVAKNWQGDPCGPIKYIWEGLNCSIDDGNKPPRITSLNLSSSGLTGEIASAISNLTKLQYLDLSNNSLNGPLPDFLTQLQSLKVLNVSKNNLTGLVSSGLLERSKAGSLSLIMEDNPGLCTPESCKENKKKKKKNLSVPLIASFSALIVILVISLGLWRFKRQKATPTPVSSNSKKKGPMKTKHQAFSYTELVNITDNFKTIIGEGGFGKVYLGTLEDHTQVAVKRLSPSSVQGYKEFQSEAQLLTIVHHRNLVSLIGYCDEGETKALIYEYMANGNLQQLLLVENSNILKWNERLNIAVDAAHGLDYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRTFNDNDTHISTRLAGTFGYIDPECQRTGNTNKINDIYSFGIILFVLITGRQAIVRTAEQSIHILEWVTPIIRAGDIQNVVDPKLKGEFNISSICMENS 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00504 814 SUPERFAMILY Protein kinase-like (PK-like) 552 803 IPR011009 -
Trre16g00504 814 PRINTS Leucine-rich repeat signature 451 464 - -
Trre16g00504 814 PRINTS Leucine-rich repeat signature 430 443 - -
Trre16g00504 814 Pfam Leucine rich repeat 404 464 IPR001611 GO:0005515
Trre16g00504 814 FunFam Leucine-rich repeat receptor-like protein kinase 546 644 - -
Trre16g00504 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Trre16g00504 814 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Trre16g00504 814 PANTHER OS07G0107800 PROTEIN-RELATED 27 806 - -
Trre16g00504 814 Gene3D Transferase(Phosphotransferase) domain 1 645 813 - -
Trre16g00504 814 Pfam Malectin-like domain 29 349 IPR024788 -
Trre16g00504 814 FunFam Lectin-domain containing receptor kinase A4.3 645 812 - -
Trre16g00504 814 ProSiteProfiles Protein kinase domain profile. 569 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00504 814 SMART serkin_6 569 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00504 814 Gene3D Ribonuclease Inhibitor 362 481 IPR032675 -
Trre16g00504 814 FunFam Leucine-rich repeat receptor-like kinase 360 493 - -
Trre16g00504 814 Gene3D Phosphorylase Kinase; domain 1 542 644 - -
Trre16g00504 814 SUPERFAMILY L domain-like 402 510 - -
Trre16g00504 814 Pfam Protein tyrosine and serine/threonine kinase 571 772 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00504 Trre-Chr16 3708311 3712453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00504 13 805 Receptor kinase-like Gene Family AT2G19230 46.898 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00504 Malectin_like 1.2e-101 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00504 - - mtr:25500366 1044.65