Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00494 ATGCAAGGTTATAAGGAGTTTCAATCAGAGGCACAACTTCTAACGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGGTGAAATCAAAGCTTTGGTTTATGAATACATGGCCAATGGAAATCTCCAACAACTCTTATTGGAGGAAAATTCAAATATTTTAAAATGGAATGAGAGACTAAACATTGCAGTTGATGCAGCACACGGACTGGATTATCTACATAATGGATGTAAACCACCTATTTTGCATAGAGATTTGAAGCCTTCCAACATATTACTAGATGATAACTTGCATGCCAAGATAGCAGATTTCGGTCTAAGTAGAGCTTTTGGTAACAATGTTGATTCTCATATATCTACACGCCCTGCTGGTACATTTGGTTACATTGATCCAGAATTTCAGAGAACAGGAAATACAAATAAGACTAATGATATCTACAGCTTTGGGATAATTCTATTTGAGTTGATCACTAGTCAGAAAGCACTAGTAAGAGCATCAGAAGAAACCATTCACATACTTCAATGGGTTACTCCCATAGTTAAGAGTGGAGATATTCAAAACATTGTTGATGCGAGGTTGCAGGGTGAATTCAACATCAATTCAGCATGGAAAGTTGTAGAGATAGCCATGTCATGTACTTCACCAATTGCAGTTGAAAGACCAGACACAAGCCAAATATTGGCAGAGCTAAAGGACTGTGTATCTTTGGAGATAGTTCAGAGAAATAATGGAAGCGCGGCAATATATGAATTGACTTCTTTATCTATTGGATCAAATACGGCTCCTTTAGCTAGGTAA 813 0.369 MQGYKEFQSEAQLLTIVHHRNLVSLIGYCDEGEIKALVYEYMANGNLQQLLLEENSNILKWNERLNIAVDAAHGLDYLHNGCKPPILHRDLKPSNILLDDNLHAKIADFGLSRAFGNNVDSHISTRPAGTFGYIDPEFQRTGNTNKTNDIYSFGIILFELITSQKALVRASEETIHILQWVTPIVKSGDIQNIVDARLQGEFNINSAWKVVEIAMSCTSPIAVERPDTSQILAELKDCVSLEIVQRNNGSAAIYELTSLSIGSNTAPLAR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00494 270 Gene3D Phosphorylase Kinase; domain 1 1 42 - -
Trre16g00494 270 Gene3D Transferase(Phosphotransferase) domain 1 43 255 - -
Trre16g00494 270 Pfam Protein tyrosine and serine/threonine kinase 5 235 IPR001245 GO:0004672|GO:0006468
Trre16g00494 270 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00494 270 PANTHER OS07G0107800 PROTEIN-RELATED 2 239 - -
Trre16g00494 270 SUPERFAMILY Protein kinase-like (PK-like) 2 235 IPR011009 -
Trre16g00494 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trre16g00494 270 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00494 270 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 42 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00494 Trre-Chr16 3643237 3645664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00494 5 245 Receptor kinase-like Gene Family AT4G29180 53.719 3.20e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00494 PK_Tyr_Ser-Thr 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00494 - - tpra:123886800 492.271