Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00493 ATGTTACTGGATTTTCTTTCGGTGTTGCTTGGTGTCCTTACTATTTTGGTTTTGATACAAGCTCAGCAGGATGATCAATCAGGATTCATAAGCTTGGATTGTGGTCTACCTGAAGATGTGAGCTATTCTGATAGGATCACAGGCATAAATTACATTTCAGATGCAAAATTTATAGATACTGGTGCAAGTAAAAGGTTAGGAAATTCTGAAAAGCTTAGTCAAGAGTTACTAGAATATGTGAGGAGCTTTCCTAGTGGAGTGAGAAATTGTTACAAAATAAATGTAACAAGTAATACTAAATATTTAATCAGAACTACTTTCTATTATGGTAACTATGACAATCAAAATAAGCCACCACAATTTGATCTTCATCTTGGAGCTAATGTATGGGACACAGTGAAGTTCACCAATTTATCAAACATCAAAACAATTGTGATCATTTACATTTCATTACAAGATTACATACAACTATGTCTTGTTAACACTGGCAAAGGGACTCCATTCATTTCAGCAATAGAATTGAGGCCTTTGAACAATGATTCTTATGTTACACAATCAGCTAGATCAGGATTATCAGAATTCCTACGATTGGATATTGGTTCCGTCACAAACTCGGAATACAGGTACAAAGACGATGTTTATGATCGCCTCTGGTTTACTTTTCAACCAGATGATATGAAACAATTAAGCGCATCGCTTAACAATGATGATCTATTAACTCAGAATATTTATAAACCACCCGCAATTGTGATGAGCACTGCAGCTACACCAGTAAATGTCCGTGCCCCTTTACAATTATATTGGAATGCAGATAATGTAAATGACCAATACTACCTTTACCTGCACTTTAATGAGGTTGAAAAGTTGGCAACAAATGAAACTAGAGCATTCAATAGCAAAGTGAATGGAGAGCTTTTATATGGACCTGAGATACCTGCATACCAGTCAGTTGATACAATATTTAGTAAAAGACCTTTCACCGGAGCCACAAGCTATGAAATTACCCTTTCTAAGACAGAGAGTTCAACTCTTCCACCCATCCTCAATGCCATTGAGGTTTATAAAGTAAAAGACTTCTCACAATCAGAAACTCAACAAGATGATGTTGATGCTATCACAAACATCAAGAATGCTTATGGGGTGGCTAGAGATTGGCAAGGAGATCCATGTGGTCCTGCAAAGTATATGTGGAAAGGACTAAACTGCAGTATTGATGACAATAACATCCCAAGAATCACATCTTTGAATTTGTCTTCAAGTGGGTTGACAGGGCAGATAGAATTTTCCATATCAAACCTCACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAACTGGTCCCTTACCAGATTTTCTGATACAACTGCATTCATTAAAAGTCTTAAATGTGGGGAAGAACAAACTTACAGGGTTAGTTCCAAGTGAACTCCTTGAGAGATCAAAAACTGGTTCACTATCATTGAGTGTGGATGATAATTCTGGTCTTTGCAAGACGAAATCCTGCAGAAAGAAGAGTTCACATATACCACTGATTGCTTCCATTTCAGCAATAATTGTTGTAATCCTCTTGATTTCTCTAGGATTTTGGATATTCAAAAGACATAAAGTTACGTCTACAAATTCAAAGAAAAGGGGTTCACTGGAATCAAAACATCAAGCATTCAATTACACTGAAATTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCACTCTACAAGATCAAACTCAAGTCGCTGTTAAGAGGCTTTCACCATCATCAGTGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAACGGTTGTTCATCATAGAAATTTGGCCTCCCTCATTGGATATTGTAATGAAGGTGAAACCAAAGCATTGATTTATGAATATGCGGCCAACGGAAATCTCCAACAACACCTATTAGCGGAAAATTCAAAGATCTTAAACTGGAATGAGAGACTTAACATTGCAGTTGATGCAGCACAAGGATTGGATTATCTGCATAATGGATGTAAGCCACCTATTATGCATAGAGATTTAAAACCATCCAACATATTGCTAGATGATAACATGCATGCCAAGATAGCTGACTTTGGTCTAAGTAGAGCTTTTGGTAACGATATTGATTCTCATATATCAACGCGCCCTGCTGGTACATTTGGTTACATTGATCCAGAATTTCAGAGAACAGGAAACACAAATAAGAAAAATGATATCTATAGCTTTGGGATAATTCTATTTGAGTTGATCACTGGCAGAAAAGCACTAGAAAGAGCATCTGGTGAAAACCTTCACATACTTCAATGGGTTCTTCCCACAGTTAAAAGAGGAGATATTCAAAATGTTGTTGATCCAAGGTTACAGGGTGAATTTAGCATCAATTCAGCATGGAAAGCTGTAGAGATTGCCATGTCATGCACTTCCCCAAATGTAGATGAAAGGCCAGACATGAGCCAAATATTAGTAGAGCTAAAGGAATGTCTATCTTTGGACATCATTCAGAGAAACTGTGGAAGCACAAGAGCTATAGATGAATTGGTTTCTTTTGCTGCTGTATCAGAAACCACTATTTTAGCTAGATAA 2616 0.3662 MLLDFLSVLLGVLTILVLIQAQQDDQSGFISLDCGLPEDVSYSDRITGINYISDAKFIDTGASKRLGNSEKLSQELLEYVRSFPSGVRNCYKINVTSNTKYLIRTTFYYGNYDNQNKPPQFDLHLGANVWDTVKFTNLSNIKTIVIIYISLQDYIQLCLVNTGKGTPFISAIELRPLNNDSYVTQSARSGLSEFLRLDIGSVTNSEYRYKDDVYDRLWFTFQPDDMKQLSASLNNDDLLTQNIYKPPAIVMSTAATPVNVRAPLQLYWNADNVNDQYYLYLHFNEVEKLATNETRAFNSKVNGELLYGPEIPAYQSVDTIFSKRPFTGATSYEITLSKTESSTLPPILNAIEVYKVKDFSQSETQQDDVDAITNIKNAYGVARDWQGDPCGPAKYMWKGLNCSIDDNNIPRITSLNLSSSGLTGQIEFSISNLTMLQYLDLSNNSLTGPLPDFLIQLHSLKVLNVGKNKLTGLVPSELLERSKTGSLSLSVDDNSGLCKTKSCRKKSSHIPLIASISAIIVVILLISLGFWIFKRHKVTSTNSKKRGSLESKHQAFNYTEILNITDNFKTIIGEGGFGKVYFGTLQDQTQVAVKRLSPSSVQGYKEFQSEAQLLTVVHHRNLASLIGYCNEGETKALIYEYAANGNLQQHLLAENSKILNWNERLNIAVDAAQGLDYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRAFGNDIDSHISTRPAGTFGYIDPEFQRTGNTNKKNDIYSFGIILFELITGRKALERASGENLHILQWVLPTVKRGDIQNVVDPRLQGEFSINSAWKAVEIAMSCTSPNVDERPDMSQILVELKECLSLDIIQRNCGSTRAIDELVSFAAVSETTILAR 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00493 871 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 642 847 - -
Trre16g00493 871 Pfam Malectin-like domain 32 356 IPR024788 -
Trre16g00493 871 FunFam Leucine-rich repeat receptor-like protein kinase 542 641 - -
Trre16g00493 871 Gene3D Ribonuclease Inhibitor 369 493 IPR032675 -
Trre16g00493 871 Gene3D Phosphorylase Kinase; domain 1 547 641 - -
Trre16g00493 871 CDD STKc_IRAK 572 837 - -
Trre16g00493 871 SUPERFAMILY Protein kinase-like (PK-like) 548 835 IPR011009 -
Trre16g00493 871 ProSiteProfiles Protein kinase domain profile. 566 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00493 871 FunFam Leucine-rich repeat receptor-like kinase 367 500 - -
Trre16g00493 871 SMART serkin_6 566 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00493 871 Pfam Protein tyrosine and serine/threonine kinase 568 834 IPR001245 GO:0004672|GO:0006468
Trre16g00493 871 PANTHER OS07G0107800 PROTEIN-RELATED 30 839 - -
Trre16g00493 871 Pfam Leucine rich repeat 410 470 IPR001611 GO:0005515
Trre16g00493 871 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Trre16g00493 871 Gene3D Transferase(Phosphotransferase) domain 1 643 850 - -
Trre16g00493 871 SUPERFAMILY L domain-like 396 484 - -
Trre16g00493 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 686 698 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00493 Trre-Chr16 3635738 3640375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00493 4 855 Receptor kinase-like Gene Family AT2G19210 45.570 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00493 Malectin_like 3.7e-104 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00493 - - mtr:25500366 1188.71