Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00492 ATGAAAAGAATGTTACTGGATTTTCTTTCGGTGTTGCTTGGTGTCCTTACTATTTTGGTTTTGATACAAGCTCAGCAGGATGATCAATCAGGATTCATAAGCTTGGATTGTGGTCTACCTGAAGATGTGAGCTATTCTGATAGGATCACAGGCATAAATTACATTTCAGATGCAAAATTTATAGATACTGGTGCAAGTAAAAGGTTAGGAAATTCTGAAAAGCTTAGTCAAGAGTTACTAGAATATGTGAGGAGCTTTCCTAGTGGAGTGAGAAATTGTTACAAAATAAATGTAACAAGTAATACTAAATATTTAATCAGAACTACTTTCTATTATGGTAACTATGACAATCAAAATAAGCCACCACAATTTGATCTTCATCTTGGAGCTAATGTATGGGACACAGTGAAGTTCACCAATTTATCAAACATCAAAACAATTGTGATCATTTACATTTCATTACAAGATTACATACAACTATGTCTTGTTAACACTGGCAAAGGGACTCCATTCATTTCAGCAATAGAATTGAGGCCTTTGAACAATGATTCTTATGTTACACAATCAGCTAGATCAGGATTATCAGAATTCCTACGATTGGATATTGGTTCCGTCACAAACTCGGAATACAGGTACAAAGACGATGTTTATGATCGCCTCTGGTTTACTTTTCAACCAGATGATATGAAACAATTAAGCGCATCGCTTAACAATGATGATCTATTAACTCAGAATATTTATAAACCACCCGCAATTGTGATGAGCACTGCAGCTACACCAGTAAATGTCCGTGCCCCTTTACAATTATATTGGAATGCAGATAATGTAAATGACCAATACTACCTTTACCTGCACTTTAATGAGGTTGAAAAGTTGGCAACAAATGAAACTAGAGCATTCAATAGCAAAGTGAATGGAGAGCTTTTATATGGACCTGAGATACCTGCATACCAGTCAGTTGATACAATATTTAGTAAAAGACCTTTCACCGGAGCCACAAGCTATGAAATTACCCTTTCTAAGACAGAGAGTTCAACTCTTCCACCCATCCTCAATGCCATTGAGGTTTATAAAGTAAAAGACTTCTCACAATCAGAAACTCAACAAGATGATGTTGATGCTATCACAAACATCAAGAATGCTTATGGGGTGGCTAGAGATTGGCAAGGAGATCCATGTGGTCCTGCAAAGTATATGTGGAAAGGACTAAACTGCAGTATTGATGACAATAACATCCCAAGAATCACATCTTTGAATTTGTCTTCAAGTGGGTTGACAGGGCAGATAGAATTTTCCATATCAAACCTCACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAACTGGTCCCTTACCAGATTTTCTGATACAACTGCATTCATTAAAAGTCTTAAATGTGGGGAAGAACAAACTTACAGGGTTAGTTCCAAGTGAACTCCTTGAGAGATCAAAAACTGGTTCACTATCATTGAGTGTGGATGATAATTCTGGTCTTTGCAAGACGAAATCCTGCAGAAAGAAGAGTTCACATATACCACTGATTGCTTCCATTTCAGCAATAATTGTTGTAATCCTCTTGATTTCTCTAGGATTTTGGATATTCAAAAGACATAAAGTTACGTCTACAAATTCAAAGAAAAGGGGTTCACTGGAATCAAAACATCAAGCATTCAATTACACTGAAATTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCACTCTACAAGATCAAACTCAAGTCGCTGTTAAGAGGCTTTCACCATCATCAGTGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAACGGTTGTTCATCATAGAAATTTGGCCTCCCTCATTGGATATTGTAATGAAGGTGAAACCAAAGCATTGATTTATGAATATGCGGCCAACGGAAATCTCCAACAACACCTATTAGCGGAAAATTCAAAGATCTTAAACTGGAATGAGAGACTTAACATTGCAGTTGATGCAGCACAAGGATTGGATTATCTGCATAATGGATGTAAGCCACCTATTATGCATAGAGATTTAAAACCATCCAACATATTGCTAGATGATAACATGCATGCCAAGATAGCTGACTTTGGTCTAAGTAGAGCTTTTGGTAACGATATTGATTCTCATATATCAACGCGCCCTGCTGGTACATTTGGTTACATTGATCCAGAATTTCAGAGAACAGGAAACACAAATAAGAAAAATGATATCTATAGCTTTGGGATAATTCTATTTGAGTTGATCACTGGCAGAAAAGCACTAGAAAGAGCATCTGGTGAAAACCTTCACATACTTCAATGGGTTCTTCCCACAGTTAAAAGAGGAGATATTCAAAATGTTGTTGATCCAAGGTTACAGGGTGAATTTAGCATCAATTCAGCATGGAAAGCTGTAGAGATTGCCATGTCATGCACTTCCCCAAATGTAGATGAAAGGCCAGACATGAGCCAAATATTAGTAGAGCTAAAGGAATGTCTATCTTTGGACATCATTCAGAGAAACTGTGGAAGCACAAGAGCTATAGATGAATTGGTTTCTTTTGCTGCTGTATCAGAAACCACTATTTTAGCTAGATAA 2625 0.3657 MKRMLLDFLSVLLGVLTILVLIQAQQDDQSGFISLDCGLPEDVSYSDRITGINYISDAKFIDTGASKRLGNSEKLSQELLEYVRSFPSGVRNCYKINVTSNTKYLIRTTFYYGNYDNQNKPPQFDLHLGANVWDTVKFTNLSNIKTIVIIYISLQDYIQLCLVNTGKGTPFISAIELRPLNNDSYVTQSARSGLSEFLRLDIGSVTNSEYRYKDDVYDRLWFTFQPDDMKQLSASLNNDDLLTQNIYKPPAIVMSTAATPVNVRAPLQLYWNADNVNDQYYLYLHFNEVEKLATNETRAFNSKVNGELLYGPEIPAYQSVDTIFSKRPFTGATSYEITLSKTESSTLPPILNAIEVYKVKDFSQSETQQDDVDAITNIKNAYGVARDWQGDPCGPAKYMWKGLNCSIDDNNIPRITSLNLSSSGLTGQIEFSISNLTMLQYLDLSNNSLTGPLPDFLIQLHSLKVLNVGKNKLTGLVPSELLERSKTGSLSLSVDDNSGLCKTKSCRKKSSHIPLIASISAIIVVILLISLGFWIFKRHKVTSTNSKKRGSLESKHQAFNYTEILNITDNFKTIIGEGGFGKVYFGTLQDQTQVAVKRLSPSSVQGYKEFQSEAQLLTVVHHRNLASLIGYCNEGETKALIYEYAANGNLQQHLLAENSKILNWNERLNIAVDAAQGLDYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRAFGNDIDSHISTRPAGTFGYIDPEFQRTGNTNKKNDIYSFGIILFELITGRKALERASGENLHILQWVLPTVKRGDIQNVVDPRLQGEFSINSAWKAVEIAMSCTSPNVDERPDMSQILVELKECLSLDIIQRNCGSTRAIDELVSFAAVSETTILAR 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00492 874 SUPERFAMILY L domain-like 399 487 - -
Trre16g00492 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Trre16g00492 874 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Trre16g00492 874 SMART serkin_6 569 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00492 874 Gene3D Transferase(Phosphotransferase) domain 1 646 853 - -
Trre16g00492 874 Pfam Protein tyrosine and serine/threonine kinase 571 837 IPR001245 GO:0004672|GO:0006468
Trre16g00492 874 PANTHER OS07G0107800 PROTEIN-RELATED 33 842 - -
Trre16g00492 874 FunFam Leucine-rich repeat receptor-like kinase 370 503 - -
Trre16g00492 874 FunFam Leucine-rich repeat receptor-like protein kinase 545 644 - -
Trre16g00492 874 CDD STKc_IRAK 575 840 - -
Trre16g00492 874 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 645 850 - -
Trre16g00492 874 Gene3D Phosphorylase Kinase; domain 1 550 644 - -
Trre16g00492 874 SUPERFAMILY Protein kinase-like (PK-like) 551 838 IPR011009 -
Trre16g00492 874 Pfam Malectin-like domain 35 359 IPR024788 -
Trre16g00492 874 Gene3D Ribonuclease Inhibitor 372 496 IPR032675 -
Trre16g00492 874 Pfam Leucine rich repeat 413 473 IPR001611 GO:0005515
Trre16g00492 874 ProSiteProfiles Protein kinase domain profile. 569 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00492 Trre-Chr16 3635738 3640384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00492 7 858 Receptor kinase-like Gene Family AT2G19210 45.570 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00492 Malectin_like 3.8e-104 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00492 - - mtr:25500366 1189.1