Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00489 ATGAACATGAATAGCAAAGAAACACTTGTTGTACTTTTAGTGTCATTCTTATTCTTTTGTAGCTATGCACAAGATACACTTGTACCAGCTATCATAACATTTGGTGACTCTGCTGTTGATGTAGGGAATAATGACTACCTTCCTACTCTTTTTAAGGCTAATTACCCTCCTTATGGTAGAGACTTTGTTAATAAACAACCTACTGGCAGGTTTTGCAATGGCAAATTAGCTACTGATTTTACAGCTGAAACACTTGGTTTTACGACATTTCCACCGGCATATCTTAGTCCACAGGCATCAGGGAAGAATCTCCTTATCGGAGCAAACTTCGCTTCAGCTGCATCTGGTTTTGATGAAAAGGCTGCTACATTGAATCATGCAATTCCATTGTCCCAACAGTTGAATTATTTCAAGGAATATCAAGGCAAGTTGGCTAAGGTTGCTGGCAGTAAAAAAGCTGCATCAATTATCAAGGATTCTTTGTATCTATTGAGTGCTGGCAGCAGTGACTTTCTACAAAATTATTATGTCAATCCTTGGATCAACAAATTAGTCACTGTTGATGAGTATTCAGCTTATCTACTAGACTCATTCAATAGCTTTGTTACGGACTTGTATGGATTGGGAGCTAGGAAAATTGGAGTGACTTCACTTCCACCATTGGGTTGTCTACCTGCTGCAAGGACTTTATTTGGTGCCCATGAGAGTGGTTGTGTCTCAAGAATCAACACCGATGTTCAAGGATTTAACAAGAAAGTCAACTCAGCTGCATCAAATCTTCAAAAACAACATTCTGGTCTTAAGATTGTGATTTTTGATATTTACAAGCCTCTCTATGACCTTGTTCAAAACCCTTCAAATTCCGGTTTTGCTGAGGCAGGAAGAGGTTGCTGTGGTACAGGAACTGTAGAAACAACATTCTTGTTATGCAATCAAAAATCACCAGGAACTTGTTCTAATGCAACTCAGTATGTTTTTTGGGACAGTGTTCATCCATCAGAAGCTGCTAATCAAGTTATAGCAGATGCTTTACTTCTACAAGGCATAGCTCTTATCACATAA 1062 0.3861 MNMNSKETLVVLLVSFLFFCSYAQDTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFVNKQPTGRFCNGKLATDFTAETLGFTTFPPAYLSPQASGKNLLIGANFASAASGFDEKAATLNHAIPLSQQLNYFKEYQGKLAKVAGSKKAASIIKDSLYLLSAGSSDFLQNYYVNPWINKLVTVDEYSAYLLDSFNSFVTDLYGLGARKIGVTSLPPLGCLPAARTLFGAHESGCVSRINTDVQGFNKKVNSAASNLQKQHSGLKIVIFDIYKPLYDLVQNPSNSGFAEAGRGCCGTGTVETTFLLCNQKSPGTCSNATQYVFWDSVHPSEAANQVIADALLLQGIALIT 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00489 353 Gene3D SGNH hydrolase 19 348 IPR036514 -
Trre16g00489 353 FunFam GDSL esterase/lipase APG 20 349 - -
Trre16g00489 353 Pfam GDSL-like Lipase/Acylhydrolase 31 344 IPR001087 GO:0016788
Trre16g00489 353 CDD SGNH_plant_lipase_like 29 345 IPR035669 -
Trre16g00489 353 PANTHER GDSL ESTERASE/LIPASE EXL3 16 344 - -
Trre16g00489 353 SUPERFAMILY SGNH hydrolase 31 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00489 Trre-Chr16 3628776 3631011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00489 3 345 Pollen Coat Proteome AT1G75910 35.260 1.27e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00489 - - gmx:100793645 597.045