Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00480 ATGGGAAAAGCTAGTAGGTGGTTGAAGAATTTGTTAGTTGGAAACAAGAAAAAGGAAAAGGAGAAGGACCACAACAATGACATTAATTCAGGTTTCATGACACCTGACAATAACAACAAAAAGGAGAAGAAAAGATGGAGTTTTGCAAAACAAGGGAAGAATGTGGAAGTGGAAGTTGAGGAACCAAAAATTACTCAAACTTCATCTTCTGATACTTCTTGGCTCAGATCCTATATTGCTGATACAGAAAATCAGCAGAACAAACATGCAATTGCTGTTGCAGCTGCTACGGCGGCCGCTGCCGATGCTGCTGTTGCCGCCGCTCAGGCTGCCGTCGCAGTTGTGAGACTAACTAGTCATGGAAGAGGCACATTGTTTAGTGGAAGTAGGGAGAAATGGGGTGCTGTAAAGATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAAGCTCTTAGAGCATTGAAAGGATTGGTTAAGATTCAAGCTCTTGTTAGAGGCTATCTTGTTAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTATTCAGAGCTCAAACTTCTGTTAGAACACAACGAGCTCGTCGTTCCATGAGTAAAGAAAATCGATTCCTACCTGAAATTCTTGCAAGAAAATCTATGGAACGATTTGATGAAACAAGGAGCGAGTTTCACAGCAAAAGATTACCAACATCATATGAAACATCAATGAATGGATATGATGATCAAAGTCCAAAGATTGTTGAAATTGACACATACAAGACAAAAACAAAATCTAGGAGATTTTCCTCAACAATGTCTGAATGTGGAGAAGAATTACCACATTGTCACACAATTTCATCATCACCTCTTCCAGGTAGAATCTCAATTCCAACTGATTGTAGAAATCTTCATCATCATCAACAACAAGACTTTGATTGGTATTTCAACAATCTTGAAGATTCAAGGTACCCTACAACACATAACACACCGCGTTTCAATCATTCGTCTATGCGTCCAAATATTGCTCCAAATACACCATCAAAGAGTGTTTGTGGTGACACTTTCTTTAGACCTTATTATTACTCAAATTTTCCTAATTACATGGCTAATACTCAGTCATTTAAGGCTAAATTAAGGTCTCACAGTGCACCTAAACAAAGACCTGAAGTTAAGAAAAGGCTTTCACTCAATGAAATGATGGCTGCAAGAAACAGTATAAGTGGTGTTAGAATGCAAAGGCCACCATCTTCAAATTTTCAGACACAACATGAAGAAGAATCTTGGAATTCTTGA 1278 0.3881 MGKASRWLKNLLVGNKKKEKEKDHNNDINSGFMTPDNNNKKEKKRWSFAKQGKNVEVEVEEPKITQTSSSDTSWLRSYIADTENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALFRAQTSVRTQRARRSMSKENRFLPEILARKSMERFDETRSEFHSKRLPTSYETSMNGYDDQSPKIVEIDTYKTKTKSRRFSSTMSECGEELPHCHTISSSPLPGRISIPTDCRNLHHHQQQDFDWYFNNLEDSRYPTTHNTPRFNHSSMRPNIAPNTPSKSVCGDTFFRPYYYSNFPNYMANTQSFKAKLRSHSAPKQRPEVKKRLSLNEMMAARNSISGVRMQRPPSSNFQTQHEEESWNS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00480 425 Gene3D - 132 173 - -
Trre16g00480 425 SMART iq_5 153 174 IPR000048 GO:0005515
Trre16g00480 425 SMART iq_5 130 152 IPR000048 GO:0005515
Trre16g00480 425 MobiDBLite consensus disorder prediction 399 425 - -
Trre16g00480 425 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Trre16g00480 425 Pfam IQ calmodulin-binding motif 158 172 IPR000048 GO:0005515
Trre16g00480 425 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515
Trre16g00480 425 MobiDBLite consensus disorder prediction 404 425 - -
Trre16g00480 425 MobiDBLite consensus disorder prediction 1 44 - -
Trre16g00480 425 Pfam Protein of unknown function (DUF4005) 324 403 IPR025064 -
Trre16g00480 425 ProSiteProfiles IQ motif profile. 155 182 IPR000048 GO:0005515
Trre16g00480 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 173 IPR027417 -
Trre16g00480 425 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Trre16g00480 425 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00480 Trre-Chr16 3569827 3572018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00480 1 406 IQD Protein Family AT3G16490 52.771 1.22e-109 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00480 - - gmx:100797686 543.502