Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00476 ATGTGGCAAAGAAGCCACAAGTGTTCTTTAGAGGAGGAGAGGAAATTGGAGCTTAGACTTGGTCCACCTGGTGAAGATGAGTCATACAATGAAAAAAGCATGAAAAATGTCAAAAAAGAAAGAGATGAATCACAACCCTGTTGCACAAATTTGACCAACAAGTCTCAAAAAAGAAATGCAACTAGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAACATTGCAAGTGGAAGTTCTTCTAAGCCACTGACCGAGTCGCAGAATGTTGTTCAAGAGAATGTTGCTGCTAGTAACAAACCTATTAGTAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCAATTGGGAGAAAAGTAGACATCAATGCTTATGATAGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGAGATAAATTTATCTAATAACAACAAGCAAGAGGAAGATAAAGGCATGATGAAAGGGTCATTGATTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACCGTGAAGAGGTTGCGAGTGTCCAAGAGTTCTGACCTTCCTGCTTTTAACCGTAGTAAGAAAGACTAG 672 0.4018 MWQRSHKCSLEEERKLELRLGPPGEDESYNEKSMKNVKKERDESQPCCTNLTNKSQKRNATSPVVGWPPIRSFRKNIASGSSSKPLTESQNVVQENVAASNKPISNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDDLFRGLLEEINLSNNNKQEEDKGMMKGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNRSKKD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00476 223 SUPERFAMILY CAD & PB1 domains 102 209 - -
Trre16g00476 223 MobiDBLite consensus disorder prediction 1 63 - -
Trre16g00476 223 ProSiteProfiles PB1 domain profile. 110 211 IPR000270 GO:0005515
Trre16g00476 223 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 213 IPR003311 GO:0005634|GO:0006355
Trre16g00476 223 MobiDBLite consensus disorder prediction 1 45 - -
Trre16g00476 223 FunFam Auxin-responsive protein 105 222 - -
Trre16g00476 223 MobiDBLite consensus disorder prediction 46 62 - -
Trre16g00476 223 Pfam AUX/IAA family 36 214 IPR033389 -
Trre16g00476 223 Gene3D - 105 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00476 Trre-Chr16 3534844 3537358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00476 113 208 B3 DNA Binding Superfamily AT4G23980 35.417 2.08e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g00476 AUX_IAA 2.9e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00476 K14484 - jre:108985056 233.417