LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g00476	ATGTGGCAAAGAAGCCACAAGTGTTCTTTAGAGGAGGAGAGGAAATTGGAGCTTAGACTTGGTCCACCTGGTGAAGATGAGTCATACAATGAAAAAAGCATGAAAAATGTCAAAAAAGAAAGAGATGAATCACAACCCTGTTGCACAAATTTGACCAACAAGTCTCAAAAAAGAAATGCAACTAGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAACATTGCAAGTGGAAGTTCTTCTAAGCCACTGACCGAGTCGCAGAATGTTGTTCAAGAGAATGTTGCTGCTAGTAACAAACCTATTAGTAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCAATTGGGAGAAAAGTAGACATCAATGCTTATGATAGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGAGATAAATTTATCTAATAACAACAAGCAAGAGGAAGATAAAGGCATGATGAAAGGGTCATTGATTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACCGTGAAGAGGTTGCGAGTGTCCAAGAGTTCTGACCTTCCTGCTTTTAACCGTAGTAAGAAAGACTAG	672	0.4018	MWQRSHKCSLEEERKLELRLGPPGEDESYNEKSMKNVKKERDESQPCCTNLTNKSQKRNATSPVVGWPPIRSFRKNIASGSSSKPLTESQNVVQENVAASNKPISNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDDLFRGLLEEINLSNNNKQEEDKGMMKGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNRSKKD	223

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre16g00476	223	SUPERFAMILY	CAD & PB1 domains	102	209	-	-
Trre16g00476	223	MobiDBLite	consensus disorder prediction	1	63	-	-
Trre16g00476	223	ProSiteProfiles	PB1 domain profile.	110	211	IPR000270	GO:0005515
Trre16g00476	223	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	14	213	IPR003311	GO:0005634\|GO:0006355
Trre16g00476	223	MobiDBLite	consensus disorder prediction	1	45	-	-
Trre16g00476	223	FunFam	Auxin-responsive protein	105	222	-	-
Trre16g00476	223	MobiDBLite	consensus disorder prediction	46	62	-	-
Trre16g00476	223	Pfam	AUX/IAA family	36	214	IPR033389	-
Trre16g00476	223	Gene3D	-	105	221	-	-

Showing 1 to 9 of 9 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g00476	Trre-Chr16	3534844	3537358	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g00476	113	208	B3 DNA Binding Superfamily	AT4G23980	35.417	2.08e-13	67.0

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Trre16g00476		AUX_IAA	2.9e-63	CL0072

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g00476	K14484		-	jre:108985056	233.417

Showing 1 to 1 of 1 entries