Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00474 ATGTTTGATGTATTACCAAGTGACATCACAGTTGAAGGAAATGGTTGGGATTATTTATTCATAAGGAAGAATTGTTCTTGTGCATCTGGTATCAAGAAATATGTGTCTAACACTACTTACACTGTGAAATCAAATGAAGGGTTTGTTGATGATTTGGTTATGGATGCATATGATGGGCTTATTTTGTTACCAAACACTTCAAGGAAAGCAAGGAATGGTGCTGTTATATCATTGAGGTTGTTTTGTGGCTGTTCTAATGGACCGTGGAACTATCTGTTGAGTTATGTGTTGAGAGATGGGGACAGTGTTGAATCTTTGTCTAGTAGATTTGGGGTTAGTATGGATAGTATTGAGGATGTGAATGGTCTTGATGGTCCTGATAATGTTACTGTCGGTTCACTTTATTACATTCCTCTTGATTCTGTCCCTGGTGACCCTTATCCTCTGAATAATGCTTCTCCACCCGCTTCTGTTCCTACTCCTTCTGTTGATAGTTTATCAGGTGATGATGCCAATCATCATGTACCCTATGCATTGATTATTGGTGGTTTAGGAGTCGGTCTTGTTCTGATACTATTAAGCATAGTTCTTTGCGTTTGCCTGAGATCATCGAATTGTTATTCTGATTCCAGAAGTCATGAGAAAGATGGCGAGGGAAAGGTCTCTCATAAGTTCCATATTCTTCGGAATCCAAGTTTTTTGTGTGGTTCTGGAAGGTACATATGCGGCAAACATGTTGACCACAAGCAAAGAGACGGTGACTCCAGCACTCAAACAATTACTGTTCCAAAAGCTTCAACTTTAGGGCCGGACGTATTTGATATGGATAAACCTGTAGTTTTTGCATATGAAGAGATTTTTTCGTCAACCGAAGGCTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTCTACTATAGCCTCCTTCGCGATCAGGAAGTTGCTATTAAAAGAATGAAGGCTACAAAAACAAAAGAATTCACATCAGAGATTAAAGTTTTATGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCCAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCACCACTATCATGGATCATGAGGGTCCAAATTGCACTTGATGCTGCTAGGGGACTTGAATATATACACGAGCACACAAAAGCTCATTATGTTCATCGAGATATAAAGACAAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAGATTTCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAATGAGGGGGATGTTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCGGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTTTATGCATTTGGTGTTGTTCTATTTGAGACTATAACCGGAAAGGAGGCCATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGATCACTAGCATCAATAATGTTGGCAGTTCTTAGGAACTCACCTGATTCGTTGAGCATGTCAAGCATGAAAGATTACATTGATCCAAATATGATGAATCTGTATCCCCACGATTGTGTATTTAAGATGGCTTTGCTGGCAAAGCAATGTGTGGACGATGATCCGATCTTACGACCAGATATGAAACAAATAGTGATTTCCATCTCACAGATTCTTTTGTCTTCTATTGAGTGGGAAGCAACACTAGCTGGGAATAGCCAAGTATTCAGTGGACTTGTTCAGGGAAGATAG 1812 0.3929 MFDVLPSDITVEGNGWDYLFIRKNCSCASGIKKYVSNTTYTVKSNEGFVDDLVMDAYDGLILLPNTSRKARNGAVISLRLFCGCSNGPWNYLLSYVLRDGDSVESLSSRFGVSMDSIEDVNGLDGPDNVTVGSLYYIPLDSVPGDPYPLNNASPPASVPTPSVDSLSGDDANHHVPYALIIGGLGVGLVLILLSIVLCVCLRSSNCYSDSRSHEKDGEGKVSHKFHILRNPSFLCGSGRYICGKHVDHKQRDGDSSTQTITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMKATKTKEFTSEIKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFETITGKEAIIRTEGMMTKNPERRSLASIMLAVLRNSPDSLSMSSMKDYIDPNMMNLYPHDCVFKMALLAKQCVDDDPILRPDMKQIVISISQILLSSIEWEATLAGNSQVFSGLVQGR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00474 603 Gene3D Phosphorylase Kinase; domain 1 269 364 - -
Trre16g00474 603 ProSitePatterns Protein kinases ATP-binding region signature. 299 320 IPR017441 GO:0005524
Trre16g00474 603 CDD LysM 94 137 IPR018392 -
Trre16g00474 603 ProSiteProfiles Protein kinase domain profile. 293 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00474 603 FunFam PTI1-like tyrosine-protein kinase 3 365 589 - -
Trre16g00474 603 SUPERFAMILY LysM domain 94 138 IPR036779 -
Trre16g00474 603 Pfam LysM domain 95 132 IPR018392 -
Trre16g00474 603 SMART serkin_6 293 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00474 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Trre16g00474 603 ProSiteProfiles LysM domain profile. 93 137 IPR018392 -
Trre16g00474 603 SMART LysM_2 94 138 IPR018392 -
Trre16g00474 603 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 20 597 IPR044812 GO:0019199|GO:0045087
Trre16g00474 603 Gene3D LysM domain 90 143 IPR036779 -
Trre16g00474 603 Gene3D Transferase(Phosphotransferase) domain 1 366 589 - -
Trre16g00474 603 FunFam Kinase family protein 268 364 - -
Trre16g00474 603 Pfam Protein tyrosine and serine/threonine kinase 297 572 IPR001245 GO:0004672|GO:0006468
Trre16g00474 603 SUPERFAMILY Protein kinase-like (PK-like) 272 572 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00474 Trre-Chr16 3515235 3519827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00474 1 603 Receptor kinase-like Gene Family AT1G51940 67.374 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre16g00474 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00474 - - gmx:100796989 1021.15