Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00473 ATGGTTAATGTAGGAAAAAACCCCAATTTGAAGTTACTTCAGTTTCTTCAATTTCTATTTTACCTTAATTTCAATAGAATCAGTTCTTATCAGATGTCAGCTATGAACTGTACGGACACAAGACGTATTTGTACTTCTTTCTTGGCCTATAAGCCTAAAAAAAACCAATCTTTGGGAGTGATTCAGAGTATGTTTGATGTATTACCAAGTGACATCACAGTTGAAGGAAATGGTTGGGATTATTTATTCATAAGGAAGAATTGTTCTTGTGCATCTGGTATCAAGAAATATGTGTCTAACACTACTTACACTGTGAAATCAAATGAAGGGTTTGTTGATGATTTGGTTATGGATGCATATGATGGGCTTATTTTGTTACCAAACACTTCAAGGAAAGCAAGGAATGGTGCTGTTATATCATTGAGGTTGTTTTGTGGCTGTTCTAATGGACCGTGGAACTATCTGTTGAGTTATGTGTTGAGAGATGGGGACAGTGTTGAATCTTTGTCTAGTAGATTTGGGGTTAGTATGGATAGTATTGAGGATGTGAATGGTCTTGATGGTCCTGATAATGTTACTGTCGGTTCACTTTATTACATTCCTCTTGATTCTGTCCCTGGTGACCCTTATCCTCTGAATAATGCTTCTCCACCCGCTTCTGTTCCTACTCCTTCTGTTGATAGTTTATCAGGTGATGATGCCAATCATCATGTACCCTATGCATTGATTATTGGTGGTTTAGGAGTCGGTCTTGTTCTGATACTATTAAGCATAGTTCTTTGCGTTTGCCTGAGATCATCGAATTGTTATTCTGATTCCAGAAGTCATGAGAAAGATGGCGAGGGAAAGGTCTCTCATAAGTTCCATATTCTTCGGAATCCAAGTTTTTTGTGTGGTTCTGGAAGGTACATATGCGGCAAACATGTTGACCACAAGCAAAGAGACGGTGACTCCAGCACTCAAACAATTACTGTTCCAAAAGCTTCAACTTTAGGGCCGGACGTATTTGATATGGATAAACCTGTAGTTTTTGCATATGAAGAGATTTTTTCGTCAACCGAAGGCTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTCTACTATAGCCTCCTTCGCGATCAGGAAGTTGCTATTAAAAGAATGAAGGCTACAAAAACAAAAGAATTCACATCAGAGATTAAAGTTTTATGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCCAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCACCACTATCATGGATCATGAGGGTCCAAATTGCACTTGATGCTGCTAGGGGACTTGAATATATACACGAGCACACAAAAGCTCATTATGTTCATCGAGATATAAAGACAAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAGATTTCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAATGAGGGGGATGTTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCGGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTTTATGCATTTGGTGTTGTTCTATTTGAGACTATAACCGGAAAGGAGGCCATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGATCACTAGCATCAATAATGTTGGCAGTTCTTAGGAACTCACCTGATTCGTTGAGCATGTCAAGCATGAAAGATTACATTGATCCAAATATGATGAATCTGTATCCCCACGATTGTGTATTTAAGATGGCTTTGCTGGCAAAGCAATGTGTGGACGATGATCCGATCTTACGACCAGATATGAAACAAATAGTGATTTCCATCTCACAGATTCTTTTGTCTTCTATTGAGTGGGAAGCAACACTAGCTGGGAATAGCCAAGTATTCAGTGGACTTGTTCAGGGAAGATAG 2001 0.3873 MVNVGKNPNLKLLQFLQFLFYLNFNRISSYQMSAMNCTDTRRICTSFLAYKPKKNQSLGVIQSMFDVLPSDITVEGNGWDYLFIRKNCSCASGIKKYVSNTTYTVKSNEGFVDDLVMDAYDGLILLPNTSRKARNGAVISLRLFCGCSNGPWNYLLSYVLRDGDSVESLSSRFGVSMDSIEDVNGLDGPDNVTVGSLYYIPLDSVPGDPYPLNNASPPASVPTPSVDSLSGDDANHHVPYALIIGGLGVGLVLILLSIVLCVCLRSSNCYSDSRSHEKDGEGKVSHKFHILRNPSFLCGSGRYICGKHVDHKQRDGDSSTQTITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMKATKTKEFTSEIKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFETITGKEAIIRTEGMMTKNPERRSLASIMLAVLRNSPDSLSMSSMKDYIDPNMMNLYPHDCVFKMALLAKQCVDDDPILRPDMKQIVISISQILLSSIEWEATLAGNSQVFSGLVQGR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00473 666 Pfam Protein tyrosine and serine/threonine kinase 360 635 IPR001245 GO:0004672|GO:0006468
Trre16g00473 666 ProSiteProfiles Protein kinase domain profile. 356 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00473 666 SMART serkin_6 356 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00473 666 FunFam Kinase family protein 331 427 - -
Trre16g00473 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Trre16g00473 666 Gene3D Phosphorylase Kinase; domain 1 332 427 - -
Trre16g00473 666 SUPERFAMILY LysM domain 157 201 IPR036779 -
Trre16g00473 666 CDD LysM 157 200 IPR018392 -
Trre16g00473 666 SUPERFAMILY Protein kinase-like (PK-like) 335 635 IPR011009 -
Trre16g00473 666 Gene3D Transferase(Phosphotransferase) domain 1 429 652 - -
Trre16g00473 666 ProSiteProfiles LysM domain profile. 156 200 IPR018392 -
Trre16g00473 666 Gene3D LysM domain 153 206 IPR036779 -
Trre16g00473 666 Pfam LysM domain 158 195 IPR018392 -
Trre16g00473 666 FunFam PTI1-like tyrosine-protein kinase 3 428 652 - -
Trre16g00473 666 SMART LysM_2 157 201 IPR018392 -
Trre16g00473 666 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 17 660 IPR044812 GO:0019199|GO:0045087
Trre16g00473 666 ProSitePatterns Protein kinases ATP-binding region signature. 362 383 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00473 Trre-Chr16 3515235 3520016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00473 35 666 Receptor kinase-like Gene Family AT1G51940 67.445 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre16g00473 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00473 - - gmx:100796989 1066.6