Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00455 ATGCCGGTATTGCGCAGTGGAGCACGCCGTGGTCGGCCACCAAAGCAAAACCGACAACGACCGCAGCAGAAAACTCCGGCCGTAGGGGATGCGATTGCTACTAGAACTAGACGGCGACGTGCAGCTGCTTTAGCGGTTAATGATCACGTTGAAGAGGAGCCGATTGCTGTTGCGGCAGTAAAGGAGAGGAATGAGAAGGTAGATGTCGCCGCAACGGAAAAGGGAGAAGAGGAGGAGAATCGAGCATTGGAGGAAGCTGGTGGAGAGGAGAAGGAAGAGATTGGGGAGAAACAGATGGTTGGAATTGATAGTGCTGGTCATAGCAATGTTAAGGCTGATGACGCCGACGGTGAAGAAGAAAGCGCCTTTGTTATTCCTGAAAAGGTTCAAGTAGGTGATTCTCCTTTGTATAAAGTAGAGAAAAAACTTGGCAAGGGTGGATTTGGGCAGGTATATGTTGGTCGGCGTGTATCTGGTGGATATTTGAACCAGAGAATTGGACCTGGAGCTGTAGAGGTAGCAATAAAATTTGAGCACATAAGTAGTAAAGGATGTAACCATGGACCACCAAATGAGTGGCACGTCTACAACACCCTCGGTGGAAGTCATGGTGTGCCACAGGTACATTACAAGGGCAAGCAAGATGACTATTTCATCATGATCATGGATATTCTAGGACCTAGCTTGTGGGATGTTTGGAATACTAAGTCTCACAGCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCCCAAGGGTATGTACATGGAGACGTGAAACCGGAAAATTTTCTGCTTGGCGCTCCTGGGACAGCGGACGAGAAAAAATTGTTCCTGGTGGATCTCGGACTAGCTACTAAATGGCGGGATAGTACAACTGGTTTACATGTGGACTATGACCAAAGGCCTGATGTTTTCAGGGGCACAGTCCGCTATGCAAGTGTGCATGCACATTTGGGGAGAACTGGAAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTGGTTTTTCTTCTTCGAGGTCATCTTCCTTGGCAAGGATATCAGGGAGAAAACAAGGGATATCAGGTTTGTCGGAAGAAGATGGGAACGCCTCCAGATACCCTATGTTGTTTTTGTCCCCAGCCTTTTAAAGAGTTTGTTGAACATGTAGTAAGCTTAAAGTATGATGAAGAGCCGAATTACGCAAAATACATTTCTCTCTTTGAAGGGATTATTGGTCCAAACCCAGATATTAGGCCACTTAATACAGAAGGTGCCCAAAAGCTTGTTGGTCATAAAAGAGTCCGGCTGGCTTTAGAAGATGATGATGAACAACCCCAAAAGAAGGTTCGAGTGGGAATTCCAGCGAACCAGTGGATTAGTGTTTACAATGCTCGTAGACCTATGAAACAAAGATATCACTACAATGTGTCAAGTACAAGATTATCGCAGCACATTGACAAGGGAAACGAGGATGGTTTATATATTAGCAGTGTTGCTTCATCTCAGGGCCTATGGGCCTTAATTATGGATGCCGGGACAGGTTTCACTTCCCAAGTTTATGAACTCTCCCCCCAATTTTTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAGTTACTATATCAATGCAGTTGCAGGAGTTGCAAATGGGAGTTCATTAGTAGTAATGTCTAAAGGCACCCAATATATTCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTTAAATGGATTAACAAAAAGTGGAGGGAGGGCTTTTTTGTAACCTCAATGGCCACAGCAGGGCCCAAATGGGGAGTAGTTATGTCTCGTGGGACAGGGTTTTCAAAACAGGTAGTCGAACTAGATTTTGTGTATCCTAGTGAAGGTATTCACAAGCGGTGGGAGAGTGGATACCGAATTACATCGACTGCTGCAACTTTGGACCAAGCTGCTTTTGTTCTGAGTATTCCAAGGAAGAAGCTGCAAGACGAAACTCAGGAAACGCTAAGGACTACTGCTTTTCCTAGTACACATGTTAAGGAGAAATGGGCGAAAAACCTCTACATTGCTTCTATTTGCTTTGGACGTACCGTCTCTTGA 2103 0.4489 MPVLRSGARRGRPPKQNRQRPQQKTPAVGDAIATRTRRRRAAALAVNDHVEEEPIAVAAVKERNEKVDVAATEKGEEEENRALEEAGGEEKEEIGEKQMVGIDSAGHSNVKADDADGEEESAFVIPEKVQVGDSPLYKVEKKLGKGGFGQVYVGRRVSGGYLNQRIGPGAVEVAIKFEHISSKGCNHGPPNEWHVYNTLGGSHGVPQVHYKGKQDDYFIMIMDILGPSLWDVWNTKSHSMSTEMVACIAIEAISILEKMHSQGYVHGDVKPENFLLGAPGTADEKKLFLVDLGLATKWRDSTTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGHLPWQGYQGENKGYQVCRKKMGTPPDTLCCFCPQPFKEFVEHVVSLKYDEEPNYAKYISLFEGIIGPNPDIRPLNTEGAQKLVGHKRVRLALEDDDEQPQKKVRVGIPANQWISVYNARRPMKQRYHYNVSSTRLSQHIDKGNEDGLYISSVASSQGLWALIMDAGTGFTSQVYELSPQFFHKEWIMEQWEKSYYINAVAGVANGSSLVVMSKGTQYIQQSYKVSDSFPFKWINKKWREGFFVTSMATAGPKWGVVMSRGTGFSKQVVELDFVYPSEGIHKRWESGYRITSTAATLDQAAFVLSIPRKKLQDETQETLRTTAFPSTHVKEKWAKNLYIASICFGRTVS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00455 700 ProSiteProfiles Protein kinase domain profile. 137 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00455 700 CDD STKc_CK1 137 413 - -
Trre16g00455 700 Gene3D Transferase(Phosphotransferase) domain 1 103 454 - -
Trre16g00455 700 SUPERFAMILY Protein kinase-like (PK-like) 137 419 IPR011009 -
Trre16g00455 700 ProSitePatterns Protein kinases ATP-binding region signature. 143 176 IPR017441 GO:0005524
Trre16g00455 700 PANTHER CASEIN KINASE-RELATED 137 665 - -
Trre16g00455 700 MobiDBLite consensus disorder prediction 69 93 - -
Trre16g00455 700 MobiDBLite consensus disorder prediction 1 37 - -
Trre16g00455 700 FunFam casein kinase 1-like protein HD16 109 456 - -
Trre16g00455 700 SMART serkin_6 137 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00455 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Trre16g00455 700 Pfam Protein kinase domain 137 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00455 Trre-Chr16 3378927 3384452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00455 121 413 MAP Kinase Kinase Kinase AT5G50180 22.819 4.59e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre16g00455 Pkinase 7.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00455 - - gmx:100799630 1093.18