Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00451 ATGTCAATGGCCTGCAAGGATGGTAGTAATAAGCATTTAATGGATAATGGTAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTTGAAAGGCTTTATCACGACTGTCCTAAACCTAGTTCGATTCGAAGACAACAACTCATTAGGGAGTGTCCTATTCTCTCTAATATTGAACCAAGGCAAATCAAAGTTTGGTTCCAAAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAATCTTTCCGGCTGCAAGGTGTGAATAGGAAGTTGACAGCCATGAACAAGTTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCATCTGGTGTATGAGAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGCGAGTCAGTTGTGACGAGTGGTCAGCACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGCGGTCTAGTGGGACTAGAGCCCACTAGGGTTGCGGAAATCCTCAAAGATCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATATTGTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTACGCTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCACCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTATATGAATCACCAACAGTTCTTGCTCAGAAGACTACTATGGCGGCCTTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGCCCAATGTCACTGGGTGGGGTAGACGACCAGCAGCTCTGCGCGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTGCTGATGAAGGATGGACTATGATGGGCAATGATGGTGTAGATGATGTTACTATCCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCTTTTGGCAATGGATTCCCGTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCCTCGATGCTATTACAGAATGTGCCTCCAGCCATTCTCCTAAGGTTCCTGCGAGAACATAGATCAGAATGGGCAGACAATAACATGGATGCGTACACAGCTGCTGCTATTAAAGTTGGCCCTTGTAGCCTAACAGGTTCTCGCATAGGAAATTATGGGGGTCAAGTTATACTCCCACTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTCATCAAATTGGACGGAGTTGCCCATTCGCCTGAAGACACAATGATGGCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGAATGGATGAGAATGCTATTGGCACGTGCGCAGAACTTATATTTGCTCCGATTGATGCTTCCTTTGCTGATGATGCTCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAAGAAGCTTCCAGTCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGACGTTGGTGGCCCTACTGGAAACCGAGCTTCAAGTGATAATGCTGGAAATTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCACATGCAAGAGAATGTAGCCTGCATGGCACGTCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATCTGAGTTCACATTCTGGGCTGAGGTCACCATTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTGGATCTACTAAAATCTAATAACGAAGGAAAAGAACCTATACTTAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACACTAAAGGCATTGCCGGTATTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAAACTACCCTAGTTGCATTACAAGATATAACTTTGGAGAAAATATTTGATGATCATGGTCGAAAAACACTCTTTTCCGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATCTGTCTCTCAAGCATGGGGCGACCTGTTTCGTACGAGAGAGCTGTTGCTTGGAAGGTGCTGAATGAAGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2514 0.4515 MSMACKDGSNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPTVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFADEGWTMMGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRIGNYGGQVILPLAHTIEHEEFLEVIKLDGVAHSPEDTMMARELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGGPTGNRASSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHSGLRSPLGTPEAQTLAHWICNSYRCYLGVDLLKSNNEGKEPILKSLWHHSDAVLCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKTLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEQNAHCICFMFVNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00451 837 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Trre16g00451 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 837 IPR044830 GO:0003700
Trre16g00451 837 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Trre16g00451 837 Pfam START domain 159 367 IPR002913 GO:0008289
Trre16g00451 837 SUPERFAMILY Bet v1-like 158 368 - -
Trre16g00451 837 SMART START_1 158 368 IPR002913 GO:0008289
Trre16g00451 837 CDD homeodomain 18 78 IPR001356 GO:0003677
Trre16g00451 837 CDD START_ArGLABRA2_like 153 368 - -
Trre16g00451 837 Gene3D - 10 82 - -
Trre16g00451 837 FunFam homeobox-leucine zipper protein ATHB-15 194 375 - -
Trre16g00451 837 Coils Coil 87 107 - -
Trre16g00451 837 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Trre16g00451 837 CDD bZIP 70 109 - -
Trre16g00451 837 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Trre16g00451 837 SMART HOX_1 15 81 IPR001356 GO:0003677
Trre16g00451 837 Pfam MEKHLA domain 694 836 IPR013978 -
Trre16g00451 837 ProSiteProfiles START domain profile. 149 349 IPR002913 GO:0008289
Trre16g00451 837 Gene3D - 193 371 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00451 Trre-Chr16 3344759 3351904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00451 9 837 Homeobox Transcription Factor Family AT4G32880 78.520 0.0 1370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g00451 START 6.1e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00451 K09338 - gmx:100800165 1568.9