Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00449 ATGGAAGCACCGGATTACTTTGTCGGTGGCTACTACGGTGCCGGAGTACACGGAGGAATCGACCAATTCTCACCGGAAAAGCGTCATGGTCATGGTGGTGGTGTTGACCAGAAGCCTTGTGAGACTTTTGCCATTGATGACTTACTTGATTTCTCCAATGCTGATGCTATTATGTCTGACGGTTTCTTCGACAATGTCGCTGGTAATTCCACCGACTCTTCCAATGTTACTGCCGTTGATAGCTGTAACTCGTCAGGCTCCGGTGGAGATAATCGCTTTGGAGGCACAATTGTTCCATATGGCTTCTCCGGTGATGTTCAACTCAACGGTGAACTCTGTGTTCCGTATGATGAAATGGCGGAATTGGAATGGCTCTCGAATTTCGTGGAAGATTCATACTCAGCCGAAGAGGAATTGAAAACACTGCAACTTCTCTCTGGTGCCGGCGCCGTCAAACCACAAACGCCGGAGTCTTCCTCTTCCACCGAAACTCTCCCGGCGTTTTCATCTGACGAGAGTGCTCGGAATGTTAACGCGTCGTTTCTCCGACCGGAAACACCACTCCCTGGAAAAGCAAGGAGCAAACGCTCACGCGCTGCACCAGGCGATTGGTCCACGCGCCTACTACATATCCCTGACGCGCCACCACAACAGATGAAAATTGTTCAAATTAAGAAACGTGAGGATCCAAATGTAGAATGTTCTGGAAGGAAATGTCTCCACTGCGGCACAGATAAAACGCCGCAGTGGAGAACCGGTCCAATGGGACCGAAAACACTTTGCAATGCTTGTGGTGTTAGGTTTAAGTCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCGAGTCCAACTTTTGTATCGGCGAAGCATTCAAATTCGCATAGGAAAGTTTTGGAACTAAGGAGGCAGAAAGAGATGCAAAGATCACAGCATCAACAACTTCTGAGTCACAGTTCAATTTTCGGCGTATCATCTAACGGTGGAGATGACTTCATCAATTATCATCATCATCATCATTGTGGGCCAGAATTTAGGCATGTTATCTAG 1047 0.4842 MEAPDYFVGGYYGAGVHGGIDQFSPEKRHGHGGGVDQKPCETFAIDDLLDFSNADAIMSDGFFDNVAGNSTDSSNVTAVDSCNSSGSGGDNRFGGTIVPYGFSGDVQLNGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTETLPAFSSDESARNVNASFLRPETPLPGKARSKRSRAAPGDWSTRLLHIPDAPPQQMKIVQIKKREDPNVECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHSSIFGVSSNGGDDFINYHHHHHCGPEFRHVI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00449 348 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Trre16g00449 348 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Trre16g00449 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 296 - -
Trre16g00449 348 MobiDBLite consensus disorder prediction 150 210 - -
Trre16g00449 348 MobiDBLite consensus disorder prediction 152 180 - -
Trre16g00449 348 FunFam GATA transcription factor 227 314 - -
Trre16g00449 348 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Trre16g00449 348 PANTHER GATA TRANSCRIPTION FACTOR 41 313 - -
Trre16g00449 348 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Trre16g00449 348 Gene3D - 234 315 IPR013088 GO:0006355|GO:0008270
Trre16g00449 348 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00449 Trre-Chr16 3325421 3326631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00449 41 348 C2C2-Gata Transcription Factor Family AT4G32890 48.276 1.70e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g00449 GATA 7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00449 - - cam:101510199 600.897