Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00446 ATGACACAAACAACAACAACCTCGTCAGAAACAACCTCAAACTCCTCAACCTCTTCAACATCTTCACCACCCTCACATTCAACCCAAAAACAAAGCCCAACAAAGGCCCAAAAGCCCAAAGACACCAAACACCCAACCTACCATGGTGTTAGAAAACGCAATTGGGGTAAATGGGTTTCAGAAATTCGTGAACCAAGAAAAAAATCAAGAATTTGGTTAGGAACATTCTCAACACCAGAAATGGCAGCAAGAGCACATGATGTAGCAGCTTTAACAATCAAAGGAAAAACCGCAATTCTTAATTTTCCTCATTTATCAAACATGCTTCCTAGACCTGCCACGTCATCACCACGTGACATTCAAGCTGCAGCTACAGCAGCAGCTGCTATGGTTGACTTTGATGATGGCAACCACACTGTCTTGCACGTGACAGAACAACAATGTTGTTGTGATGATGAATCGGAGGAACAAGAACTTAGTCAGATTGTTGAACTTCCTAAAATTAATGAAGAAGGTGAAGATGACTCGGTTGTTGACTCAGTTAATGCTGAGTTTGTTTTGCTTGATGACTCGGTAATTGATAGTAGTAATTGGGTTTATCATCTTTCTCATGAGTCAATTGGGTTTGAAGGAATTGAATTCTATTCAACTTTTTCTGATGATTTTTTTATACCCATTTGGGATTAA 687 0.3959 MTQTTTTSSETTSNSSTSSTSSPPSHSTQKQSPTKAQKPKDTKHPTYHGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKTAILNFPHLSNMLPRPATSSPRDIQAAATAAAAMVDFDDGNHTVLHVTEQQCCCDDESEEQELSQIVELPKINEEGEDDSVVDSVNAEFVLLDDSVIDSSNWVYHLSHESIGFEGIEFYSTFSDDFFIPIWD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00446 228 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Trre16g00446 228 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Trre16g00446 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 172 - -
Trre16g00446 228 MobiDBLite consensus disorder prediction 1 52 - -
Trre16g00446 228 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Trre16g00446 228 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Trre16g00446 228 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Trre16g00446 228 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Trre16g00446 228 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Trre16g00446 228 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Trre16g00446 228 MobiDBLite consensus disorder prediction 1 35 - -
Trre16g00446 228 FunFam Ethylene-responsive transcription factor 2 46 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00446 Trre-Chr16 3298923 3299609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00446 1 189 AP2-EREBP Transcription Factor Family AT5G11590 47.500 9.03e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00446 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00446 K09286 - gmx:100804056 211.46