Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00434 ATGGAAAATCGTCAACGAATAACACTTTACGACCAAATGATTTCCGGTAACGCTAGCAACAACAACACACGAATCTCTCTTGCTAGTTTAATCCAAAACGACGCCGTTTTAACCAACCAAAAATCCCCAAACCCAACACTCTTAGACATTATACGAGAAAACGAACCCAACAACAACGTTGTTAATGTTAACAACAATCGAAAATCATGGAAAGGTTTTAAGGAATTACTTCGTTTAAAGCGTCGTAACTCGGACGAGTCAACTCAACAACAACAACAACAAAACGACATCGTTCATGAAGATGTTGTGAATTCGGATCTGACAGAGTTACTTGCCGGCGGGGAATCCTCCGACGAGGAAATTAACGTTAATAATTCGGAGACAGCGCAGATTAGTATGTCGTTGATGGATTTGTTGGAAGAAAGTGAAATTGAATTGGATCGAAGTAGTTATGTTGATGATGAAGGTGTTGATGACGTGGACCAGAATCATGAAGAAGAAAAAGAAGAGGAAAGAGAAGAAGAAGAAGGAGGAGAAGGGAATGTTAAGGTGGAACACAATTGTTGCGTGTGCATGGTAAGGCATAAAGGTGCAGCGTTTATACCGTGTGGACACACGTTTTGCAGAATGTGTTCAAGGGAGCTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATATTAGAAGTTCTTGATATTTTCTAA 711 0.398 MENRQRITLYDQMISGNASNNNTRISLASLIQNDAVLTNQKSPNPTLLDIIRENEPNNNVVNVNNNRKSWKGFKELLRLKRRNSDESTQQQQQQNDIVHEDVVNSDLTELLAGGESSDEEINVNNSETAQISMSLMDLLEESEIELDRSSYVDDEGVDDVDQNHEEEKEEEREEEEGGEGNVKVEHNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00434 236 SUPERFAMILY RING/U-box 187 232 - -
Trre16g00434 236 CDD RING-HC 188 225 - -
Trre16g00434 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 236 IPR013083 -
Trre16g00434 236 MobiDBLite consensus disorder prediction 86 101 - -
Trre16g00434 236 ProSiteProfiles Zinc finger RING-type profile. 188 226 IPR001841 -
Trre16g00434 236 MobiDBLite consensus disorder prediction 158 176 - -
Trre16g00434 236 SMART ring_2 188 225 IPR001841 -
Trre16g00434 236 MobiDBLite consensus disorder prediction 82 102 - -
Trre16g00434 236 Pfam Zinc finger, C3HC4 type (RING finger) 185 230 - -
Trre16g00434 236 PANTHER OS01G0917900 PROTEIN 4 96 - -
Trre16g00434 236 MobiDBLite consensus disorder prediction 150 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00434 Trre-Chr16 3203444 3204154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00434 3 236 C3H Transcription Factor Family AT3G25030 35.185 1.01e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00434 - - cam:101511225 301.982