Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00432 ATGGCTTTCCTAAGTCATAACATAAATCACTTGTTCATTACTTTCCTCGTACTATTTTGTACTACCTTTTATTCATGTTATAGTTCAGTCAACGACACAATTACATCATCCAAATCACTCAAAGACCAAGACACAATAACCTCAAACAACACAAACTTCAAGCTAGGATTTTTCAGCCCAATAAATTCAACCACACGTTACTTGGGAATTTGGTACATCAATGAAACCAACAACATATGGATTGCAAACAGAGATCAACCTCTTAAAGATTCACCAGGAATAGTCACAATTGACAAACATGGAAATCTTGTAATATTGAACAATCAAAATGGTACCATCATTTGGACAACAAATATTTCAAATGTTTCAACAAATTCAACAGCTCAACTTGATGATTTAGGAAACTTGATTCTAACGAACATCGATTCTGGAGAAAAAATTTGGGATAGTTTCTCACACCCTGCAGATGCAGCTGTTCCAACCATGAGAATTGCTGCTAACAAAGTAACAAATAAGAAAATAGCTTTTGTATCATGGAAAAGTGAAAATGATCCTTCTTCAGGACATTTTTCAGCTAGTCTTGAAAGATTGGATGCACCGGAAATTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTCTCGGATCTCCGAGAATGTTAACGGAGTATTTATTCGGTTGGAGTTTAATTCCCGATGATGGTGATGGAACTGCTTATTTAACTTACGATTTCGGCGACAAAACTATGTTTGGAATTCTCTCATTGACATACCATGGAACACTTAAGTTGGTTGAGTATAAAAATAAAAAGGAAATTTTGAGACTTGGGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGGCCATTTGGGAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGATGGGTTTGAGCCAAAAAATTTGGTGGAATGGAGTTTAAGAAATTGGAGTAATGGTTGTGTGAGGAAAGAGGGATTTAACTTGAAGTGTGAGATTTTGAAGAATGGATCAAATGAAGTTAAACAAGATGGTTTTGCTGTGCAACATAATATGAAAGTTCCTGATTTTATAGAGAGATCAGTTAGTAATGAAAACAATTGTGCAGCAGATTGTTTGGCAAATTGTTCTTGTATGGCACATGCATATGACCCTTCTATAGGTTGTATGTATTGGAGTGGAAATTTAATTGATTTGCAGAAATTTCCTTACGGAGGAGTTGATCTCTTCATTCGTGTACCGGCAGAACTAGTTGCAGATAATAAAAAGAAAAAAGGGGTCAACAAGAGTTTTATAATCATTCCTATTGTTGGAGGGATAGGAGCACTTACCTTGGTTATATGTGCTTATCTTTTGTGGAGGAAATGTTCTGCTAGACATAAAGAAAGACACCCTCAAAACTCGATTATGAGAGGACAAAAACAAATGAAACTGGATGAACTACCACTATATGATTTTAAAAAGCTTGAAACCGCCACAAACAATTTTCACATTGATAACATGCTTGGGAAGGGAGGTTTTGGCCCAGTATACAAGGGAATAATGGAAGATGACCATGAAATTGCGGTAAAAAGACTCTCAAAAGCATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTACTAGTGATTTCAAAACTTCAACATCGAAATCTTGTAAGAATTCTTGGTTGTTGTGTTGAAAGAGGCGAGCAAATTTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTCTTTGATCCACTACAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAAACATAATCGAAGGAATAGCTCGAGGTATACTCTATCTTCACAGAGACTCAAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGCGACATGATTCCCAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGATGAAGCTAACACAAACAGGGTTGTTGGAACTTATGGTTACATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCAGAGAAATCAGATGTCTATAGCTTTGGGGTTTTATTGCTAGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTTATAACAACGAGGATTCTCTTAGTCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAAGACAACATTATATCTCTAATAGATCCAGAAGTATGGGATCCATACTATGAGAGCAGCATGTTGAGGTGCATACACATAGGACTTCTATGTGTGCAAGAACTTCCAAGAGAAAGACCAAATATATCAACTGTTGTTTTGATGCTCATAAGTGAGATTACACATCTTCCTCCTCCAGGGAAAGTTGCATTTGTTCTTAAGCAAAATTCAAGAAGTACACAATCTTCTCAAAAAAGTCATCAATCTAACTCAAACAATAATGTAACTCTGAGTGAAGTCCAAGGCAGATAA 2487 0.3587 MAFLSHNINHLFITFLVLFCTTFYSCYSSVNDTITSSKSLKDQDTITSNNTNFKLGFFSPINSTTRYLGIWYINETNNIWIANRDQPLKDSPGIVTIDKHGNLVILNNQNGTIIWTTNISNVSTNSTAQLDDLGNLILTNIDSGEKIWDSFSHPADAAVPTMRIAANKVTNKKIAFVSWKSENDPSSGHFSASLERLDAPEIFIWHDKNIHWRTGPWNGRVFLGSPRMLTEYLFGWSLIPDDGDGTAYLTYDFGDKTMFGILSLTYHGTLKLVEYKNKKEILRLGVDQNECDFYGKCGPFGNCDNSSVPICSCFDGFEPKNLVEWSLRNWSNGCVRKEGFNLKCEILKNGSNEVKQDGFAVQHNMKVPDFIERSVSNENNCAADCLANCSCMAHAYDPSIGCMYWSGNLIDLQKFPYGGVDLFIRVPAELVADNKKKKGVNKSFIIIPIVGGIGALTLVICAYLLWRKCSARHKERHPQNSIMRGQKQMKLDELPLYDFKKLETATNNFHIDNMLGKGGFGPVYKGIMEDDHEIAVKRLSKASGQGIEEFMNEVLVISKLQHRNLVRILGCCVERGEQILVYEFMPNKSLDAFLFDPLQKKILDWRKRSNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDDEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYNNEDSLSLVGFAWKLWLEDNIISLIDPEVWDPYYESSMLRCIHIGLLCVQELPRERPNISTVVLMLISEITHLPPPGKVAFVLKQNSRSTQSSQKSHQSNSNNNVTLSEVQGR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00432 828 SMART blect_4 37 154 IPR001480 -
Trre16g00432 828 CDD PAN_AP_plant 349 427 - -
Trre16g00432 828 Gene3D Transferase(Phosphotransferase) domain 1 585 787 - -
Trre16g00432 828 Pfam PAN-like domain 355 412 IPR003609 -
Trre16g00432 828 Pfam D-mannose binding lectin 79 180 IPR001480 -
Trre16g00432 828 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Trre16g00432 828 Pfam Protein tyrosine and serine/threonine kinase 510 776 IPR001245 GO:0004672|GO:0006468
Trre16g00432 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 151 - -
Trre16g00432 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Trre16g00432 828 MobiDBLite consensus disorder prediction 804 828 - -
Trre16g00432 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 219 IPR036426 -
Trre16g00432 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 772 - -
Trre16g00432 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 584 - -
Trre16g00432 828 SMART ntp_6 354 426 IPR003609 -
Trre16g00432 828 PIRSF SRK 4 828 IPR024171 GO:0004674
Trre16g00432 828 Gene3D - 25 153 IPR036426 -
Trre16g00432 828 ProSiteProfiles Bulb-type lectin domain profile. 31 151 IPR001480 -
Trre16g00432 828 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00432 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 789 - -
Trre16g00432 828 SMART serkin_6 509 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00432 828 SUPERFAMILY Protein kinase-like (PK-like) 494 816 IPR011009 -
Trre16g00432 828 Gene3D Phosphorylase Kinase; domain 1 483 584 - -
Trre16g00432 828 CDD STKc_IRAK 515 781 - -
Trre16g00432 828 CDD B_lectin 37 154 IPR001480 -
Trre16g00432 828 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00432 Trre-Chr16 3189883 3193367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00432 434 809 Receptor kinase-like Gene Family AT4G23190 50.388 6.46e-122 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g00432 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00432 - - ccaj:109790907 1177.93