Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00431 ATGGGTTTCATAAGTCATAACACAAATAATTTGTTCATTACTTTCCTCATATTTTGCAGCTTTTGTTCATGTTATAGTTCCATCAATGACACCATTACTTTATCAAAATCACTCAAAGACCAAGAAACAATAACCTCAAACAGCACAAACTTCAAACTAGGATTTTTCAGCCCAATAAATTCAACCAACCGTTACCTAGGAATTTGGTACATCAATGAAACAAACAACATATGGATTGCAAACAGAGACCAACCCATCAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGAAATCTTGTAATCTTGAACAAACAAAATGGTATCATCATTTGGTCGACAAACATTTCAACTTCAACAAATTCATCAGCTCAACTTGATGATTCAGGAAACTTGGTTCTAAGTGACATAAATTCTGGAGAAACAATTTGGGATAGTTTCTCACACCCTGCAGATGCAGCTGTTCCAACAATGAGAATTTCTACTAACAAAGTAACAGGTAAGCAAATAGCCTTTGTAGCAAGAAAAAGTGACAATGATCCTTCTTCAGGACATTTTTCAGCTAGTATTGAAAGATTGGGTTTGGATGCACCAGAAATTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTCTTGGATTTCCGACAATGTTAACCGAGTATTTATTCGGTTGGCGTTTACATTATGACGATGGAACAGATTATATAACTAAAAGTAACACCGACAAATCTAGGTTTGGAATTCTCACATTAACACCACATGGAACACTTAAGTTGGTTGAGTATATAAATAAAACAAAATTTCTTAGTCTTGAGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGGCCATTTGGGAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAGGGGTTTGAGCCAAAGAATTTGGCGGAATGGAATTTAAGAAATTGGACTAATGGTTGTGTCAGGAAGGAAGGATTGAACTTGAAGTGTGAGATTTTGAAGACTAATGGATCAAATGAAGTTAAACAAGATAGGTTTTTGGTGAAACATAATATGAAAGTTCCTGATTTTATTTACCAACAAGATAGTTCTGTGGGATCAGATGGTAATCAAACTAAGTGTGGAACAAATTGTTTGGCAAATTGTGCTTGTTCGGCATATGCATATGATCCTTATATAGGTTGTATGTATTGGAGTGGAGAGTTAATTGACTTGCAGAAATTTCCTTACGGAGGAGTTGATCTCTTCATTCGTGTGTCGGCAGAATTAGTTGCAGTTGCAAATAATAAAAAGAAAAAAGAGCTCAACAAGAGTTTTATAATCATTCCTATTATTGGAGGGATAGGATCATTTACCTTGGTTATATGTGCTTATCTTTTGTGGAGGAGATCTTCTGCTAGACATAGAGAAACACACCCTCAAATCTCGATTATGAGGAGACAAAATCAAATGAAATTGGATGAGCTACCATTATATAATTTTAAAAAGCTCGAAACTGCCACAAATAGTTTTCATGCTGGTAATATGCTTGGGAAGGGAGGTTTTGGCCCAGTATACAAGGGAATAATAGAAAATGGCCATGAAATTGCGGTAAAAAGACTCTCAAAAGCATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTACTAGTGATTTCAAAACTTCAACATCGTAATCTTGTAAGAATTCTTGGTTGTTGTGTTGAAAGAGGCGAGCAAATTTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTCTTTGATCCACTACAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAATCATAATCGAAGGAATAGCTCGAGGAATACTCTATCTTCACAGAGACTCGAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGTTGAAGCAAACACAAACAGGGTTGTTGGAACTTATGGTTATATGCCTCCTGAATATGCAATGGAGGGACTTTTCTCAGAGAAATCAGATGTCTATAGCTTTGGGGTTTTATTGCTAGAGATTGTTAGCGGAAGAAGAAATATTAGCTTTTATAACAACGAGGATTCTCTTAGTCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAGGACAACATTATATCTCTAATAGATCCAAAAGTATGGGATGCATGCTTTGAGAGCAGCATGTTGAGGTGTATACAAATAGGACTTCTATGTGTGCAAGAACTTCCAAAAAAAAGACCAAATATATCAACTGTTGTTTTGATGCTCATAAGTGAGATTACACATCTTCCTCCTCCAGGGAAAGTTGCATTTGTTCTTAAGAAAAATTCAAGAAGTACACAATCTTCTCAAAAAAGTCATCAATCTAACTCAAACAATAATCTAACTCTGAGTGAAGTCCAAGGCAGATAA 2505 0.3525 MGFISHNTNNLFITFLIFCSFCSCYSSINDTITLSKSLKDQETITSNSTNFKLGFFSPINSTNRYLGIWYINETNNIWIANRDQPIKDSNGIVSIHKDGNLVILNKQNGIIIWSTNISTSTNSSAQLDDSGNLVLSDINSGETIWDSFSHPADAAVPTMRISTNKVTGKQIAFVARKSDNDPSSGHFSASIERLGLDAPEIFIWHDKNIHWRTGPWNGRVFLGFPTMLTEYLFGWRLHYDDGTDYITKSNTDKSRFGILTLTPHGTLKLVEYINKTKFLSLEVDQNECDFYGKCGPFGNCDNSSVPICSCFEGFEPKNLAEWNLRNWTNGCVRKEGLNLKCEILKTNGSNEVKQDRFLVKHNMKVPDFIYQQDSSVGSDGNQTKCGTNCLANCACSAYAYDPYIGCMYWSGELIDLQKFPYGGVDLFIRVSAELVAVANNKKKKELNKSFIIIPIIGGIGSFTLVICAYLLWRRSSARHRETHPQISIMRRQNQMKLDELPLYNFKKLETATNSFHAGNMLGKGGFGPVYKGIIENGHEIAVKRLSKASGQGIEEFMNEVLVISKLQHRNLVRILGCCVERGEQILVYEFMPNKSLDAFLFDPLQKKILDWRKRSIIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDVEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNISFYNNEDSLSLVGFAWKLWLEDNIISLIDPKVWDACFESSMLRCIQIGLLCVQELPKKRPNISTVVLMLISEITHLPPPGKVAFVLKKNSRSTQSSQKSHQSNSNNNLTLSEVQGR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00431 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 590 - -
Trre16g00431 834 SUPERFAMILY Protein kinase-like (PK-like) 500 822 IPR011009 -
Trre16g00431 834 MobiDBLite consensus disorder prediction 810 834 - -
Trre16g00431 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Trre16g00431 834 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544
Trre16g00431 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 795 - -
Trre16g00431 834 Pfam D-mannose binding lectin 77 177 IPR001480 -
Trre16g00431 834 PIRSF SRK 3 834 IPR024171 GO:0004674
Trre16g00431 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 218 IPR036426 -
Trre16g00431 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 778 - -
Trre16g00431 834 Gene3D Transferase(Phosphotransferase) domain 1 591 793 - -
Trre16g00431 834 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Trre16g00431 834 CDD B_lectin 35 151 IPR001480 -
Trre16g00431 834 CDD PAN_AP_plant 347 431 - -
Trre16g00431 834 SMART serkin_6 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00431 834 Pfam PAN-like domain 353 416 IPR003609 -
Trre16g00431 834 Pfam Protein tyrosine and serine/threonine kinase 516 784 IPR001245 GO:0004672|GO:0006468
Trre16g00431 834 ProSiteProfiles Protein kinase domain profile. 515 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00431 834 SMART ntp_6 352 430 IPR003609 -
Trre16g00431 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Trre16g00431 834 SMART blect_4 35 151 IPR001480 -
Trre16g00431 834 Gene3D - 23 149 IPR036426 -
Trre16g00431 834 CDD STKc_IRAK 521 787 - -
Trre16g00431 834 ProSiteProfiles PAN/Apple domain profile. 341 431 IPR003609 -
Trre16g00431 834 Gene3D Phosphorylase Kinase; domain 1 489 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00431 Trre-Chr16 3176638 3180406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00431 464 829 Receptor kinase-like Gene Family AT4G23150 52.732 2.60e-123 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g00431 PK_Tyr_Ser-Thr 7.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00431 - - ccaj:109790907 1107.05