Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00430 ATGGCTTTTCTAAGTCATAACATAAACCACTTGTTCATTACTTTCCTCTTATTTTGCAGCTTTTGTTCATGTTATTGTTCCATCAATGACACCATTACTTTATCAAAATCACTCAAAGACCAAGATACAATAACCTCAAACAGCACAAACTTCAAGCTAGGATTTTTCAGCCCAATAAATTCAACCAACCGTTACCTAGGAATTTGGTACATCAATGAAACAAACAACATATGGATTGCAAACAGGGACGAACCCCTCAAAGATTCAAATGGAATTATCTCAATTCACAAAGATGGAAATCTTGTAATCTTGAACAAACAAAATGGTATCATCATTTGGTCAACAAACATTTCAACTTCAACAAATTCATCGGCTAAACTTGATGATTCAGGAAACTTGATTCTAAGAGACATAAATTCAGGAGAAACAATTTGGGACAGTTTTTCACACCCTGCAGATGCTGCTGTTCCAACCATGAGAATTGGTGCTAACAAATTAACAGGTAAGAAAATAACTTTTGTATCAAGAAAGAGTGAAAATGATCCATCTTCAGGACATTTTTCAGCTAGTCTTGAAAGATTGGATGCACCAGAAGTTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCTTGGAATGGAAGAGTTTTTCTCGGATCACCGAGAATGTTAACCGAGTATTTATTCGGTTGGCGTTTAGATCATGACGGTGATGGAACGGATTATATAACTTACAATTTCGCCGAAAAATCTAAGTTTGGAATTCTCTCATTGACACCACATGGAACACTTAAGTTGGTTGAGTATATTGATAAAAAGGCATTTTTAAGACTTGAGGTTGATCAAAATGAGTGTGATTTTTATGGAAAATGTGGGCCATTTGGGAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAAGGGTTTGAGCCAAAGAATTTGGTGGAATGGAATTTAAGAAATTGGACTAATGGTTGTGTGAGGAAAGAAGGATTTAACTTGAAGTGTGAGATGTTGAAGATTAATAGATCAAGTGAAGTTAAACAAGATGGTTTTTTGGTGAAACATAATATGAAAGTTCCTGATTTTTCTGTGAGATCAGATGGTAATCAAAATAAGTGTGGAACAGATTGTTTGGCAAATTGTTCTTGTACGGCATATGCATATGATCCTTATATCGGTTGTATGTATTGGAGTGGAGAGTTAATTGATTTGCAGAAATTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTTCCGGCAGAACTAGTTGCAGATGCAGTTGTTAGTAATAGTAATAAAAAGGAAAAAGGGAATAAGAAGAACTTTTTAATCATTCCAATTGTTGTTGGGATAGGAGCATTTATCTTGGTTATATGTGCTTTTCTTTGGTGGAAGAAATCTTCTACTAGAGATAAAGGAAGACAACATCAAAACTTGAATATCAGAGAAGAGAAACAAATGAAATTGGATGAACTACCACTATATGATTTTGAAAAGCTTGAAATTGCCACAAACTATTTTCACATTGGTAATATGCTTGGGAAGGGAGGTTTTGGTCCCGTATACAAGGGAGTATTGGAAGATGGGCAAGAAATTGCGGTGAAAAGACTCTCAAAAGCATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAACTTCAACATCGAAATCTTGTAAGAATTCTTGGTTGTTGTGTTGAAAGGGGCGAGCAAATGTTGGTTTATGAATTCATGCCAAATAAGAGTTTAGATGCCTTTCTCTTTGATCCACTGCAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAAACATAATTGAAGGAATTGCTCGAGGTATACTCTATCTACATAGAGACTCAAGACTAAGGATCATACATAGAGATTTGAAAGCGAGCAACATCTTACTTGATGGTGACATGATTCCAAAAATAGCAGATTTTGGTTTAGCTAGAATTGTTAAAGGAGGAGAAGATGATGAAGCTAATACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCTGAGAAATCAGATGTGTATAGTTTTGGAGTTTTACTGCTAGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTAATCACAACGAGTGCTCTCTTAGCCTTGTCGGCTTTGCATGGAAGCTATGGTTAGAGGACAACATTATATCTCTAATAGATCCAGAAGTATGGGATCCATACTATGAGAGCAGCATGTTGAGATGCATACAAATAGGACTTCTTTGTGTGCAGGAACTTCCAAGAGAAAGACCAAATATATCAACTGTTGTTTTAATGCTCATAAGTGAGATTACACATCTTCCTCCTCCAGGAAAAGTTGCATTTGTTCATAGACAAAATTCTAAAAGTACAGAATCTTCACAAAAAAGTCAGCAATCTTCTAACTCAAACAACCATGTAACTTTGAGTGAAGTCCAAGGCAGGTAA 2499 0.3545 MAFLSHNINHLFITFLLFCSFCSCYCSINDTITLSKSLKDQDTITSNSTNFKLGFFSPINSTNRYLGIWYINETNNIWIANRDEPLKDSNGIISIHKDGNLVILNKQNGIIIWSTNISTSTNSSAKLDDSGNLILRDINSGETIWDSFSHPADAAVPTMRIGANKLTGKKITFVSRKSENDPSSGHFSASLERLDAPEVFIWHDKNIHWRTGPWNGRVFLGSPRMLTEYLFGWRLDHDGDGTDYITYNFAEKSKFGILSLTPHGTLKLVEYIDKKAFLRLEVDQNECDFYGKCGPFGNCDNSSVPICSCFEGFEPKNLVEWNLRNWTNGCVRKEGFNLKCEMLKINRSSEVKQDGFLVKHNMKVPDFSVRSDGNQNKCGTDCLANCSCTAYAYDPYIGCMYWSGELIDLQKFPYGGVDLFIRVPAELVADAVVSNSNKKEKGNKKNFLIIPIVVGIGAFILVICAFLWWKKSSTRDKGRQHQNLNIREEKQMKLDELPLYDFEKLEIATNYFHIGNMLGKGGFGPVYKGVLEDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRILGCCVERGEQMLVYEFMPNKSLDAFLFDPLQKKILDWRKRSNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKIADFGLARIVKGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFNHNECSLSLVGFAWKLWLEDNIISLIDPEVWDPYYESSMLRCIQIGLLCVQELPRERPNISTVVLMLISEITHLPPPGKVAFVHRQNSKSTESSQKSQQSSNSNNHVTLSEVQGR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00430 832 SMART ntp_6 351 423 IPR003609 -
Trre16g00430 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 775 - -
Trre16g00430 832 Gene3D - 24 149 IPR036426 -
Trre16g00430 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Trre16g00430 832 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Trre16g00430 832 MobiDBLite consensus disorder prediction 801 832 - -
Trre16g00430 832 ProSiteProfiles PAN/Apple domain profile. 340 424 IPR003609 -
Trre16g00430 832 Gene3D Transferase(Phosphotransferase) domain 1 588 791 - -
Trre16g00430 832 Pfam Protein tyrosine and serine/threonine kinase 513 781 IPR001245 GO:0004672|GO:0006468
Trre16g00430 832 CDD B_lectin 35 151 IPR001480 -
Trre16g00430 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Trre16g00430 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 792 - -
Trre16g00430 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Trre16g00430 832 CDD STKc_IRAK 518 784 - -
Trre16g00430 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 587 - -
Trre16g00430 832 ProSiteProfiles Protein kinase domain profile. 512 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00430 832 SMART blect_4 35 151 IPR001480 -
Trre16g00430 832 Pfam PAN-like domain 352 409 IPR003609 -
Trre16g00430 832 SUPERFAMILY Protein kinase-like (PK-like) 497 813 IPR011009 -
Trre16g00430 832 Gene3D Phosphorylase Kinase; domain 1 485 587 - -
Trre16g00430 832 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Trre16g00430 832 SMART serkin_6 512 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00430 832 Pfam D-mannose binding lectin 77 177 IPR001480 -
Trre16g00430 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Trre16g00430 832 CDD PAN_AP_plant 348 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00430 Trre-Chr16 3168577 3172212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00430 448 812 Receptor kinase-like Gene Family AT4G23190 51.743 5.05e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g00430 PK_Tyr_Ser-Thr 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00430 - - gmx:100786846 1157.51