Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00421 ATGGCTGTTCCAAAAGTGAATGAAAAGTTGCTTGAAGACCTTCAAGTAATGGGATTTCCACATGCAAGGGCAACAAGAGCACTCTATTATTCTGGCAATAGCAGCTTGGAGGATGCTATAACATGGATGGTTGATCATGAGAATGACACTCATATTGATGAGATTCCATTGGTAGATGTAGACATTGATATTGATAGTTCTCCATCATTCCCTATAACAGAAGAAATGAGAATGAAAGCAATGGCCTTAATTGCTAACAATTTAAGGGACCAAGAGAGGAACAAGAAAAAGTATGAAGAAAAAATAATGGAAAGAGAAAGGGAAAAGGAGAGGATTCAAGCAGGTAAGAAACTCCTTGAGGCGAAGCGAATCGCAGAAGAAAATGAAAGAAAACGAAATTTAGCATTAAGAAAAGCAGAAAAAGAAGAAGAGCAAAGAGCTAGGGATAACATTCTCAAGAAACTAGAGCAAGATAAGTTGAATAGAAGGTCTAAACTTGGATTACCTTTAGAAAACCAAGCAAATGTGAGACCATCACAAGCCATTGTAATAAAGCAAGAAAAGATATCAAAGCCTGTTTATACAACCACAAAAATTGAACACTTGAGAGAATGTTTGAGGTCTCTCAAACGTGAACACAAGGGTGAAAATACAAGAATCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGTCAAGAATCCTAAGGAGGAAAAATACAGAAAGATTCGACTAAGTAATCCATTATTTCATGATAGAGTTGGAAGTTTAGATGGAGGTGTAGAATTTCTTGAGCTATGTGGTTTTGAGAGAACTGATGACTTCTTGCATCTTCCTAGTGAAAAGATTGACATGGAACTACTAAGTTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAACCCTTTCTTTGGACTTTTAAGTACTTAA 939 0.3632 MAVPKVNEKLLEDLQVMGFPHARATRALYYSGNSSLEDAITWMVDHENDTHIDEIPLVDVDIDIDSSPSFPITEEMRMKAMALIANNLRDQERNKKKYEEKIMEREREKERIQAGKKLLEAKRIAEENERKRNLALRKAEKEEEQRARDNILKKLEQDKLNRRSKLGLPLENQANVRPSQAIVIKQEKISKPVYTTTKIEHLRECLRSLKREHKGENTRIRRAFETLLVYVGNVVKNPKEEKYRKIRLSNPLFHDRVGSLDGGVEFLELCGFERTDDFLHLPSEKIDMELLSSAGFVLNSAMTNPFFGLLST 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00421 312 Gene3D - 203 300 - -
Trre16g00421 312 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Trre16g00421 312 Gene3D - 8 52 - -
Trre16g00421 312 SMART PGNneu 222 283 - -
Trre16g00421 312 Pfam UBA/TS-N domain 7 42 IPR015940 -
Trre16g00421 312 SUPERFAMILY PUG domain-like 194 306 IPR036339 -
Trre16g00421 312 Coils Coil 124 161 - -
Trre16g00421 312 Coils Coil 81 115 - -
Trre16g00421 312 Pfam PUB domain 220 287 IPR018997 -
Trre16g00421 312 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Trre16g00421 312 PANTHER F13M7.16 PROTEIN 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00421 Trre-Chr16 3126501 3129682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00421 1 310 C2H2 Transcription Factor Family AT1G04850 55.272 4.96e-94 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00421 - K24348 gmx:100781260 426.787