Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00419 ATGGAAATGCAGTGGGTTTACATTTCTATAGCCACTTTTTTGGCATGCTACATTTTTGTTAACAAATTTGTAAGGAATTTTAATGGATGGTACTATCATCTAACACTAAGAAACAAAGAGTACCCTTTGCCTCCTGGTGATATGGGGTGGCCTCTTATTGGCAATCTATTAACGTTCATCAAAAATTTCTCATCTGGCCAACCTGATTCATTCATTACCAACCTTATTCTCAAATACGGAAGACACGGTATCTACAAAACTCACTTGTTTGGAAATCCTAGTATAATCGTTTGTGAGCCTGAAATGTGTAGACGAGTGCTCTCAGACGATGTGAACTTCAAGCTTGGTTATCCAAAATCAATCAAAGAGTTGGCAAAATGCAGACCCATGATCGATGTATCTAATTCAGAACATAGACATTTTCGACGGCTAATTACTGCTCCTATTGTTGGTCACAAGGCATTAGAAGTGTACCTAGAACGTCTTGAGGACATTGTGATCAATTCTTTAGAGGAATTGTCTAGCATGAAACACCCTATTGAGCTCTTGAAAGAGATGAAGAAAGTTTCCTTTAAATCCATTGTCCATGTTTTTATGGGCTCTTCTAATGAGAACATTATTAAAAACATTGGAAGTTCATTTTCTGATATTTATAATGGCATGTTCTCTATTCCCATCAATGCACCTGGTTTTACTTTCCACAAAGCACTCAAGTCACGCAAGAAGATAGCCAACATAGTTCAACCCGTTGTGGATGAAAGGAGATTGATGATAAAAAATGGTGAACATGTAGGAGAAACAAAAGATCTTATGGATATTCTCTTGGAAATAAAAGATGAGAATGGTAGAAAATTGGAGGATGAAGATATTAGTGACTTATTGATTGGACTTTTATTTGCTGGACATGAAAGTTCAGCTACTGGGCTAATGTGGTCACTTATATATCTTACACAACATCCACATATTATGAAAAAAGCAAAGGAAGAGCAAGAAGCAATCTTGAGGGCAAGACCGACCTCCCAGAAACGATTGAGTCTTAGTGAAGTTAAACAAATGGTTTATCTTTATCAAGTAATAAATGAAGTGTTGCGATGTACCAACATTGCCTTTTCAACTTTTCGAGAGGCAACATCTGATATCAACATCAATGGTTATCTCATACCAAAAGGATGGAGGGTGTTGATATGGGCGAGAGCTATTCATATGGATTCAGTATATTATCCAAATGCAGAAGAATTCAATCCATCAAGATGGGATAATTACACTGCCAAGGCAGGAACCTTCCTTCCTTTTGGAGGAGGGAGTAGACTTTGTCCTGGAGGAGACTTAGTCAAACTTGAAACTGCTATATTTCTTCATTATTTCCTACTTAATTACAGGTTGGAACGAGTAAATCCAGAATGTCATGTGACAAGCTTGCCGGTATCTAAACCCATTGACAATTGTCTCGCTAAAGTGATAAAATTGTCATGTCCTTAA 1479 0.3719 MEMQWVYISIATFLACYIFVNKFVRNFNGWYYHLTLRNKEYPLPPGDMGWPLIGNLLTFIKNFSSGQPDSFITNLILKYGRHGIYKTHLFGNPSIIVCEPEMCRRVLSDDVNFKLGYPKSIKELAKCRPMIDVSNSEHRHFRRLITAPIVGHKALEVYLERLEDIVINSLEELSSMKHPIELLKEMKKVSFKSIVHVFMGSSNENIIKNIGSSFSDIYNGMFSIPINAPGFTFHKALKSRKKIANIVQPVVDERRLMIKNGEHVGETKDLMDILLEIKDENGRKLEDEDISDLLIGLLFAGHESSATGLMWSLIYLTQHPHIMKKAKEEQEAILRARPTSQKRLSLSEVKQMVYLYQVINEVLRCTNIAFSTFREATSDININGYLIPKGWRVLIWARAIHMDSVYYPNAEEFNPSRWDNYTAKAGTFLPFGGGSRLCPGGDLVKLETAIFLHYFLLNYRLERVNPECHVTSLPVSKPIDNCLAKVIKLSCP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00419 492 CDD CYP90-like 76 486 - -
Trre16g00419 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Trre16g00419 492 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 Pfam Cytochrome P450 44 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 PANTHER CYTOCHROME P450 26 39 474 - -
Trre16g00419 492 SUPERFAMILY Cytochrome P450 38 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre16g00419 492 Gene3D Cytochrome P450 34 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00419 Trre-Chr16 3096677 3099375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00419 14 486 Cytochrome P450 AT1G05160 46.203 5.30e-166 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00419 K04123 - ag:BAG68929 847.04