Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00409 ATGTCAAAAACTAATCAATCTGAGCAATCTATAGAAGGATGGATTTGTTTAATTCTCTTATTTCTTGTGGTACCTATTAGCTTGATTATACTCGTAATAAACTTTGAAACGCCTCCAACCAAATTCAGCATAGATGAAGCCTCGATCATACAATTCAATCTCATAAATAACAACACCTTATATTATAATTTTAAGGTCATCATCACAGCAAGAAACTTCCACAACAGAATAAAATATTATAAAAGGGGATTAAATGCAATTTTTACATATAAAGGTAATACCCTGGCTTGGGTGAAAATGGAACCTTTTGCTATAGGTCGTAAGAATATTGTTACACTTCAGCCTATAGTGCTTGCAGGGAATAGTGTGATGAAACTTGAGCCTCAACAACTTGTTGAGTATAATATGGAGACACAATTAGGAATTTATGAAATAAATTTGGACTTATTTTCAAGAGTGCATTGTCCAAGTTTGAAAATTCCTTCAATTTCCAACGGTAAACTAGCACCTACTTACAATGTCACCGCATGCTGGACCAAGGATGATCGAGATTATGATATATCATCTAATTGA 573 0.3333 MSKTNQSEQSIEGWICLILLFLVVPISLIILVINFETPPTKFSIDEASIIQFNLINNNTLYYNFKVIITARNFHNRIKYYKRGLNAIFTYKGNTLAWVKMEPFAIGRKNIVTLQPIVLAGNSVMKLEPQQLVEYNMETQLGIYEINLDLFSRVHCPSLKIPSISNGKLAPTYNVTACWTKDDRDYDISSN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00409 190 PANTHER OS05G0367900 PROTEIN 15 154 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00409 Trre-Chr16 3003989 3004561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00409 41 149 SNARE and Associated Proteins AT1G32270 25.688 8.70e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00409 - K05724 tpra:123886814 175.252