Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00405 ATGGCTTCCTCTTCTCCTAAATTGTACACTATCTTTATGTTCCTCACCCTTGCACTCCTCCTTTTCTCCACATCGGAGGTAGAAGCAAATATTTGTCAAAGGCAGAGCAAAACATTTTCAGGGCCTTGTTTAGACAATGGAAGCTGTAAAAGTCAGTGCATCAATGTGGAACATGCTACTTTTGGGGCTTGTCACCATAAAGGCATTGGATTTGCTTGCTTCTGCTACTTCAATTGCTGA 240 0.4208 MASSSPKLYTIFMFLTLALLLFSTSEVEANICQRQSKTFSGPCLDNGSCKSQCINVEHATFGACHHKGIGFACFCYFNC 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00405 79 Gene3D - 31 79 IPR036574 -
Trre16g00405 79 SMART gth_4 31 79 IPR003614 GO:0006952
Trre16g00405 79 SUPERFAMILY Scorpion toxin-like 30 79 IPR036574 -
Trre16g00405 79 PANTHER DEFENSIN-LIKE PROTEIN 1 1 76 - -
Trre16g00405 79 Pfam Gamma-thionin family 31 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00405 Trre-Chr16 2940752 2941241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00405 1 79 Plant Defensins Gene Families AT1G19610 50.000 3.04e-21 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00405 - - lja:Lj3g3v0720000.1 122.094