Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00403 ATGATTTCATCTACTAGTAAATTCTACATGGTCCTCTGTCTTGTTCTTCTCCTTATTTCCACTTGTGAATCCGAACCAAAACTTTGTGGAAGGCCAAGTAGAACATATTCAGGTCCATGTACTGACTGGGACTGTGATAAAGAGTGCATTGACTCGGAGTTGGATGCAATGTTAGGTTCTTGTGAAGACTCTTATTGCTTCTGCTTTTTCAGTTGTTGA 219 0.3973 MISSTSKFYMVLCLVLLLISTCESEPKLCGRPSRTYSGPCTDWDCDKECIDSELDAMLGSCEDSYCFCFFSC 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00403 72 Gene3D - 24 72 IPR036574 -
Trre16g00403 72 SUPERFAMILY Scorpion toxin-like 27 72 IPR036574 -
Trre16g00403 72 Pfam Gamma-thionin family 27 72 - -
Trre16g00403 72 SMART gth_4 28 72 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00403 Trre-Chr16 2928120 2928446 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00403 2 72 Plant Defensins Gene Families AT1G19610 32.911 1.41e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00403 - K06237 lja:Lj3g3v0720000.1 57.7658