Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00401 ATGACTTCCTCTGCTACTAAATTCTACACCATCTTCATGTTCACGTTCACATGTCTTGCACTTCTCCTTATTGGCACAATGGAGGTGGAAGCAAAACTTTGTCAAAAGAGAAGCAAAACATGGACAGGGTTTTGTCTTATAACGGGAAACTGTAAAAAACAGTGTATCAAAGTGGAGAAAGCAACTTTTGGTGCTTGTCATCATCAAGGCTTATTTGGTTTTGCATGCTTCTGCTACTTCAAATGCTGA 249 0.3936 MTSSATKFYTIFMFTFTCLALLLIGTMEVEAKLCQKRSKTWTGFCLITGNCKKQCIKVEKATFGACHHQGLFGFACFCYFKC 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00401 82 SMART gth_4 33 82 IPR003614 GO:0006952
Trre16g00401 82 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Trre16g00401 82 Pfam Gamma-thionin family 32 82 - -
Trre16g00401 82 SUPERFAMILY Scorpion toxin-like 31 82 IPR036574 -
Trre16g00401 82 Gene3D - 33 82 IPR036574 -
Trre16g00401 82 PANTHER DEFENSIN-LIKE PROTEIN 1 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00401 Trre-Chr16 2914458 2915414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00401 9 82 Plant Defensins Gene Families AT1G19610 51.948 3.16e-21 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00401 - - mtr:25500300 130.183