Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00399 ATGATTTCCTCTGCTAGTAAATTCTACATGTTCCTTTGTCTTATTCTTCTCCTTATTTCCTCATGTGAGGTGGAAGGAAAACTTTGTGGAAGGCCAAGTAGAACATGGTCAGGTCCTTGTATTGACTGGGACTGTGATAAAGAGTGTATCGATTCGGAGTTAGATGCAATGTTAGGTTCTTGTGAAGACTCTTATTGCTTCTGCTTCTTCAATTGTTAA 219 0.3881 MISSASKFYMFLCLILLLISSCEVEGKLCGRPSRTWSGPCIDWDCDKECIDSELDAMLGSCEDSYCFCFFNC 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00399 72 Pfam Gamma-thionin family 27 72 - -
Trre16g00399 72 PANTHER DEFENSIN-LIKE PROTEIN 1 3 69 - -
Trre16g00399 72 Gene3D - 24 72 IPR036574 -
Trre16g00399 72 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Trre16g00399 72 SMART gth_4 28 72 IPR003614 GO:0006952
Trre16g00399 72 SUPERFAMILY Scorpion toxin-like 27 72 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00399 Trre-Chr16 2903964 2904282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00399 2 72 Plant Defensins Gene Families AT1G19610 40.506 4.74e-11 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00399 - - mtr:25500300 63.1586