Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00398 ATGACTTCCTTTTCTAGTAAATTCTACATTGGCTTCATGCTCTTATGTCTTGTCCTTCTCCTTATTTCCAATTGTGATGTGGAAGCAAAATTTTGTGGAGAGCCAAGTCTAACATATTCAGGAAAATGTGACATTAATAACAGTCGATTATGTGATGAACACTGCATTAACATGGAGTTTGCAGCATACGGTGTTTGCTTCGCTAATGGTGGTTTAGATTGCTTCTGCTATATCGAGTGTTGA 243 0.3745 MTSFSSKFYIGFMLLCLVLLLISNCDVEAKFCGEPSLTYSGKCDINNSRLCDEHCINMEFAAYGVCFANGGLDCFCYIEC 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00398 80 Pfam Gamma-thionin family 31 80 - -
Trre16g00398 80 SUPERFAMILY Scorpion toxin-like 29 80 IPR036574 -
Trre16g00398 80 SMART gth_4 31 80 IPR003614 GO:0006952
Trre16g00398 80 Gene3D - 27 80 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00398 Trre-Chr16 2902449 2902774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00398 9 80 Plant Defensins Gene Families AT1G19610 38.158 1.97e-10 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00398 - K22023 han:110917571 55.8398