Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00397 ATGAATTTCTCTACTACTAAATTCTACATTGTTTTCATGTTCCTATGTCTTGCCCTTCTCCTCATTTCCACATGTGTTGTGGAAGCAAAATTTTGTGGAATGCCAAGTACAACATATTCAGGGCCTTGTGAGAACACGGAGTTCTGTAATGCACATTGCGTCAACTTGGAGTATTCAACATATGGTGTTTGCTTTCCTAATGGTGGTTTAGATTGCTTCTGCTACGTCGAGTGTTGA 237 0.3966 MNFSTTKFYIVFMFLCLALLLISTCVVEAKFCGMPSTTYSGPCENTEFCNAHCVNLEYSTYGVCFPNGGLDCFCYVEC 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00397 78 SUPERFAMILY Scorpion toxin-like 29 78 IPR036574 -
Trre16g00397 78 Gene3D - 27 78 IPR036574 -
Trre16g00397 78 Pfam Gamma-thionin family 31 78 - -
Trre16g00397 78 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00397 Trre-Chr16 2899756 2900084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00397 9 78 Plant Defensins Gene Families AT1G19610 38.158 2.86e-12 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00397 - K24461 nta:107790571 51.6026