Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00392 ATGACTTTCTCCGCAAGTAAATTCTACACCATTTTCATATTCTTCAATCTTGCCTTTCTCCTTATTTCCACATGTGATGTTGAACGAAGACTTTGTGGAACACTATGTAAAACATGGTCCGATCCTTGTATTATTAACGCGGCGTGTAATGAAGAGTGTCGTGAATCGGAATCAAAACGTTATTTACATTTTGAAATAATGAATTCCTCTCTTAGTAAATTCCATACCATCTTCATGTTCCTCTGTTTTGTCCTTCTTCTCATTTCCATATGTGGGGTTGAAGCAAAACTTTGTGAAAAGCTAAGTAAAACATGGTCAGGGCCTTGTATTATTAACTCGCCCTGTAATGAAATGTGCCGCAAATTGGAATATAAACGTTATTTACATTTTGAAATTATGAATTCATCTGTTAGTAAATTCTACACCATCTTCATGTTCCTCTGTCTTGTCCTTCTCATTTTTACATGTGAGATTGAAGCAAGACTTTGTGGAAAAGTAAGTAAAACATGGTCCGGGCCTTGTATTTTTAACGCGTATTGTAACGCAGAGTGCCTCGAATCGGAGTTTGCAAGCTACGAAATCATGAATTCATTTGCTAGTAAATTCTACATCATCTCCATGTTGTTCCTCTGTCTTGTCCTTCTCCTTATAATTTCCATATGTGAGGTGGAAGCTGAACTTTGTAAAGAGCAAAGTATAATGTGGAGAGGACCATGTTTTTTTAGTAACTCGGAGTGTAATGAATTGTGCGTCAAATGGGAGGTTGCACTTTTTGGTGCTTGTGAATTTCCTTTTGCATGCATCTGCTATTTTAAGTGTGAGCAAAATCAAATAAGAGATAAACAAAGTTTTACACTTCAATAA 864 0.3611 MTFSASKFYTIFIFFNLAFLLISTCDVERRLCGTLCKTWSDPCIINAACNEECRESESKRYLHFEIMNSSLSKFHTIFMFLCFVLLLISICGVEAKLCEKLSKTWSGPCIINSPCNEMCRKLEYKRYLHFEIMNSSVSKFYTIFMFLCLVLLIFTCEIEARLCGKVSKTWSGPCIFNAYCNAECLESEFASYEIMNSFASKFYIISMLFLCLVLLLIISICEVEAELCKEQSIMWRGPCFFSNSECNELCVKWEVALFGACEFPFACICYFKCEQNQIRDKQSFTLQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00392 287 SUPERFAMILY Scorpion toxin-like 226 273 IPR036574 -
Trre16g00392 287 SUPERFAMILY Scorpion toxin-like 95 123 IPR036574 -
Trre16g00392 287 ProSitePatterns Gamma-thionins family signature. 161 184 IPR008176 GO:0006952
Trre16g00392 287 PANTHER DEFENSIN-LIKE PROTEIN 1 205 273 - -
Trre16g00392 287 SMART gth_4 227 273 IPR003614 GO:0006952
Trre16g00392 287 Pfam Gamma-thionin family 227 273 - -
Trre16g00392 287 Pfam Gamma-thionin family 96 124 - -
Trre16g00392 287 ProSitePatterns Gamma-thionins family signature. 96 119 IPR008176 GO:0006952
Trre16g00392 287 Gene3D - 224 273 IPR036574 -
Trre16g00392 287 Gene3D - 94 127 IPR036574 -
Trre16g00392 287 Gene3D - 159 193 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00392 Trre-Chr16 2872674 2879831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00392 207 273 Plant Defensins Gene Families AT1G19610 45.833 1.52e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00392 - - mtr:25500300 99.3673