Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00358 ATGGACGAAGATTTCGACATTCCGGCGGTTGATGAAATGAACGAAGATTTCGAATTCGCCGGCGCCGAAGGTAATCCAATTCTTAAGGTTGGCGAAGAGAAGGAGATCGGTAAGCAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGTTGGGATACTCCCGATGTTGGCGATGAAGTTTACGTTCACTATACTGGAACGTTGCTTGATGGTACTAAATTTGATTCTAGCAGAGATAGGGGAACACCTTTCAACTTTAAGCTTGGACAAGGGCAAGTTATCAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCCCTTTTCACCATACCACCTGAGTTAGCTTATGGTGAATCTGGTTCTCCTCCAACTATTCCTCCCAATGCTACTCTACAATTTGATGTTGAGCTGCTGTATTGGACTAGTGTGAAGGATATATGTAAGGATGGAGGATTGTTTAAGAAGATAGTTATGGAGGGGGAGAAATGGGAAAACCCGAAGGATCCCGATGAAGTCTTTGTTAAGTATGAAGCACGTCTTGACGATGGAACGCTTGTGGCAAAATCGGACGGGGTGGAGTTCACTGTGAAGGAGGGTCATTTCTGTCCTGCATTGTCAAAGGCTGTTAAGACCATGAAGAAGGGAGAGAAAGTGATCTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGCAAGCCAGCTCATGGTGATGAAGGCGCAGTTCCACCTAATGCAACATTGCAGATTACTCTCGAGTTAGTTTCTTGGAAGACTGTTTCTGAAGTAACTGATGATAAGAAGGTCATCAAAAAGATCGTCAAGGAAGGAGAAGGATATGAGCGTCCAAACGAGGGGGCTGTTGTGAAATTGAAACTAATTGGCAAGCTGCAAGATGGCACTGTATTTTTGAAGAAAGGCCATGGTGATGACCATTCAGATCTCTTTGAATTTAAAACAGACGAGGAGCAAGTGATTGACGGGCTTGATAGAGCTGTAATTACCATGAAGAAGGGTGAGGTAGCATTGTTGACTATTGCGCCTGAGTATGCTTTTGGTTCATCAGAGTCACAGCAGGAATTGGCTGTGGTTCCTCCTAATTCAACAGTCCATTATGAAGTTGAACTGGTTTCGTTTGTAAAGGATAAGGAGTCCTGGGACATGAACACTGAAGAGAAGGTAGAAGCTGCTGGTAAGAAGAAGGAAGAAGGGAATGGGTTGTTTAAAGCTGGGAAATACTCAAAAGCTTCTAAAAGATATGAGAAGGCTGTAAAGTTCATAGAGTATGATACTTCCTATACCGAAGAGCAGAAGAAAAGTGCCAAGGCCTTGAAGGTTGCTTGTAATCTGAACAATGCAGCATGTAAGCTGAAATTGAAAGATTACAAACAGGCAGAGAAATTGTGTACAAAGGTGCTGGAGCTTGAGAGCACTAATGTAAAGGCCCTCTATAGAAGGGCCCAGGCTTATATTCAGTTAGCTGACTTGGATTTGGCTGAATTTGATATCAAGAAAGCACTTGAGATTGACCCTGACAACAGGGATGTGAAAGTGGAGTATAAGACTTTGAAGGAAAAGATGAAGGAGATCAACAAGAAGGATGCACAGTTTTTTGGGAATATGTTCAGCAAAATGAAAAAGTTGGATTCTCTTGACAATAATAAATCAGCGCCAAAGGATGCTGAACCCATGAGCATTGACAGCAAGGCATAG 1728 0.4253 MDEDFDIPAVDEMNEDFEFAGAEGNPILKVGEEKEIGKQGLKKKLLKEGEGWDTPDVGDEVYVHYTGTLLDGTKFDSSRDRGTPFNFKLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLYWTSVKDICKDGGLFKKIVMEGEKWENPKDPDEVFVKYEARLDDGTLVAKSDGVEFTVKEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKIVKEGEGYERPNEGAVVKLKLIGKLQDGTVFLKKGHGDDHSDLFEFKTDEEQVIDGLDRAVITMKKGEVALLTIAPEYAFGSSESQQELAVVPPNSTVHYEVELVSFVKDKESWDMNTEEKVEAAGKKKEEGNGLFKAGKYSKASKRYEKAVKFIEYDTSYTEEQKKSAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNRDVKVEYKTLKEKMKEINKKDAQFFGNMFSKMKKLDSLDNNKSAPKDAEPMSIDSKA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00358 575 SUPERFAMILY FKBP-like 35 150 - -
Trre16g00358 575 SUPERFAMILY FKBP-like 267 402 - -
Trre16g00358 575 Gene3D - 150 263 IPR046357 GO:0003755
Trre16g00358 575 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Trre16g00358 575 FunFam Peptidylprolyl isomerase 390 545 - -
Trre16g00358 575 SUPERFAMILY FKBP-like 148 265 - -
Trre16g00358 575 Coils Coil 518 538 - -
Trre16g00358 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Trre16g00358 575 SMART tpr_5 402 435 IPR019734 GO:0005515
Trre16g00358 575 SMART tpr_5 485 518 IPR019734 GO:0005515
Trre16g00358 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 155 266 - -
Trre16g00358 575 Gene3D Tetratricopeptide repeat domain 392 545 IPR011990 GO:0005515
Trre16g00358 575 FunFam Peptidylprolyl isomerase 150 263 - -
Trre16g00358 575 SUPERFAMILY TPR-like 390 550 IPR011990 GO:0005515
Trre16g00358 575 MobiDBLite consensus disorder prediction 554 575 - -
Trre16g00358 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 285 382 IPR001179 GO:0003755
Trre16g00358 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 260 IPR001179 GO:0003755
Trre16g00358 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 143 IPR001179 GO:0003755
Trre16g00358 575 Gene3D - 30 149 IPR046357 GO:0003755
Trre16g00358 575 Pfam Tetratricopeptide repeat 485 518 IPR001440 GO:0005515
Trre16g00358 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 385 IPR001179 GO:0003755
Trre16g00358 575 FunFam Peptidylprolyl isomerase 264 387 - -
Trre16g00358 575 Gene3D - 264 391 IPR046357 GO:0003755
Trre16g00358 575 FunFam Peptidylprolyl isomerase 31 149 - -
Trre16g00358 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 58 146 IPR001179 GO:0003755
Trre16g00358 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 263 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00358 Trre-Chr16 2596584 2601422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00358 1 559 Calmodulin-binding Proteins AT3G25230 79.964 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00358 K09571 - gmx:100803189 974.156