Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00357 ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGAAACTGGTGGAAAGAAGAAGTCATGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGCCAGCCAGCTAACACCAAGCTGTCAAGCAACAAAACAGTGAGGAGGATTCGTGTTAGAGGTGGAAATGTGAAGTGGAGAGCCTTGAGATTGGATACTGGAAACTTTTCTTGGGGAAGTGAAGCTGTCACCCGCAAAACCCGTTTGCTCGATGTTGTATACAATGCTTCCAACAATGAGCTTGTCCGTACTCAGACCCTTGTGAAGGGTGCTATCGTCCAGGTTGATGCTGCCCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGAAATTGGTAGGAAGAAGAAAACTGCTGGCAAGAAAGAATCAGAGGAAGCGGAAGCTGTTACCGAAGAGGTAAAAAAGAGTGCTCATGTTCAGAGAAAATTGGAGCAACGCCAGAAAGATCGCCAGCTTGATCCACACATTGAAGAGCAGTTCGGTGGTGGAAGATTGCTAGCAAGCATTTCTTCTCGACCTGGTCAATGTGGCAGGGCTGATGGCTATATTCTGGAAGGTAAGGAGCTAGAGTTCTACATGAAGAAACTCCAGAAGAAGAAGGGCAAGGGTGCAGCTTAA 651 0.4716 MGISRDSMHKRRETGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGVEIGRKKKTAGKKESEEAEAVTEEVKKSAHVQRKLEQRQKDRQLDPHIEEQFGGGRLLASISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00357 216 FunFam 40S ribosomal protein S8 160 213 - -
Trre16g00357 216 NCBIfam ribosomal protein eS8 1 197 IPR001047 GO:0003735|GO:0005840|GO:0006412
Trre16g00357 216 MobiDBLite consensus disorder prediction 1 36 - -
Trre16g00357 216 Gene3D - 161 213 - -
Trre16g00357 216 Gene3D - 32 160 - -
Trre16g00357 216 CDD Ribosomal_S8e_like 5 195 - -
Trre16g00357 216 Pfam Ribosomal protein S8e 5 195 IPR022309 -
Trre16g00357 216 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Trre16g00357 216 FunFam 40S ribosomal protein S8 32 159 - -
Trre16g00357 216 PANTHER 40S RIBOSOMAL PROTEIN S8 1 213 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00357 Trre-Chr16 2592185 2593921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00357 1 204 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.878 4.17e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00357 K02995 - apan:127255029 361.688