Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00353 ATGCCAACTTGGCAACCAATTTCCTCAGCCATGGAAATTCAACAAACATCATTGAATTGTTCCTCTGACCAAAACCAAGATTGTTTTTTCAACCCAAATTGGGACAATAAGTCAACAGACCAAAACCTTAACTTTGATTCAGCACTTAGTTCAATTGTCTCATCCCCTGCAGCTACATCATCACCACCACAAAATCCCAACAATATTTCCAATGAAAATTTTGTGATGAGAGAATTACTTGGAAAATTAGGAACATTTGGTGAGATCTCACAACATTCTAAGCTCAACAACAACATTGTACCAATGATGAACCATTTTGTGAAAGAAAATATGCAAACTTTAGGAGGAAAATCAATGGCTATGAATTCAACTGTACCTGAATTTTCAGCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAAAGTTTCAATGAAAGAAGTAACCAACATGTGATGAACAATGTTGATTTAGCCCAAAGATCTGTTAATCTACCAAGAGTTTCAAGTAGTCCTTCACTCAAAAACTTTGGATCTCAAATGGGTTACAAAGAGAACAAGAATTCTCCATTGCAACAAGAAAATGAGAGAATGGAAGTGACTAATTCACAAGAGGAATCTACAATCTCTGAGCAAAATACACCAAATGGTGAATTGGGTGTTAAAGCTTCACCTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCCAAAGGAAAAGCTTCAAACTTTATCAATCCTACTACCAAGGGTGTTGAAGGTAGTGGTGAAGATTCAAATGCAAAGAAAAGCAAGTCAAATGAAGGTGAGAAAATTGAGAATGGTGGCATGAATATGGAGGAAGAGTCCAAAGAAGGTAAAAATAATGCAGGGGAAGAAAAACAGAACAAGAGTAATTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAACGTGTGCGGAGGGAAAAAATAAGTGAGAGGATGAAACTTCTTCAGGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGGATGGATTTAAGTATTGAAAGTCTTGTTCTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCTTCATCACCATCCTTTTATGGGCAACAACCTCAGCAAAACCAAGCTATTGCTAATACAAATGGGACACACTGCTCAGTGGACCCATTGGACTCTTCTCTGTGCCATAATCTTGGCATAAATTTACCTTCCCTAAATGGATTTAATGAAGGTGGCTCTCAGTATCCATTAACATTCTCTGAGGAAGACTTAAACACAATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATACACTCTCCAACTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAGCTCTAA 1560 0.3635 MPTWQPISSAMEIQQTSLNCSSDQNQDCFFNPNWDNKSTDQNLNFDSALSSIVSSPAATSSPPQNPNNISNENFVMRELLGKLGTFGEISQHSKLNNNIVPMMNHFVKENMQTLGGKSMAMNSTVPEFSADPGFVQRAAKFSCFGSKSFNERSNQHVMNNVDLAQRSVNLPRVSSSPSLKNFGSQMGYKENKNSPLQQENERMEVTNSQEESTISEQNTPNGELGVKASPDMNSRKRKASSSKGKASNFINPTTKGVEGSGEDSNAKKSKSNEGEKIENGGMNMEEESKEGKNNAGEEKQNKSNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRMDLSIESLVLSKDIFQSNNSLQNSIFQLDSSSPSFYGQQPQQNQAIANTNGTHCSVDPLDSSLCHNLGINLPSLNGFNEGGSQYPLTFSEEDLNTIVQMGFGQTSNRTTPIHSPTFNGSNQATQMKIEL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00353 519 MobiDBLite consensus disorder prediction 172 224 - -
Trre16g00353 519 Pfam Helix-loop-helix DNA-binding domain 327 374 IPR011598 GO:0046983
Trre16g00353 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 373 IPR011598 GO:0046983
Trre16g00353 519 MobiDBLite consensus disorder prediction 243 260 - -
Trre16g00353 519 CDD bHLH_AtBPE_like 313 398 - -
Trre16g00353 519 SMART finulus 329 379 IPR011598 GO:0046983
Trre16g00353 519 Coils Coil 370 390 - -
Trre16g00353 519 FunFam Basic helix-loop-helix transcription factor 320 392 - -
Trre16g00353 519 MobiDBLite consensus disorder prediction 261 312 - -
Trre16g00353 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 392 IPR036638 GO:0046983
Trre16g00353 519 Gene3D - 320 395 IPR036638 GO:0046983
Trre16g00353 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 197 437 IPR024097 GO:0006355
Trre16g00353 519 MobiDBLite consensus disorder prediction 172 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00353 Trre-Chr16 2556966 2560391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00353 34 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.444 8.89e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00353 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00353 - - gmx:100801233 628.632