Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00352 ATGGAAAACCAATTTTTTATGAATGTTGGGTTTGAACCTTTACCTCATTCTTCAATGCCAACTTGGCAACCAATTTCCTCAGCCATGGAAATTCAACAAACATCATTGAATTGTTCCTCTGACCAAAACCAAGATTGTTTTTTCAACCCAAATTGGGACAATAAGTCAACAGACCAAAACCTTAACTTTGATTCAGCACTTAGTTCAATTGTCTCATCCCCTGCAGCTACATCATCACCACCACAAAATCCCAACAATATTTCCAATGAAAATTTTGTGATGAGAGAATTACTTGGAAAATTAGGAACATTTGGTGAGATCTCACAACATTCTAAGCTCAACAACAACATTGTACCAATGATGAACCATTTTGTGAAAGAAAATATGCAAACTTTAGGAGGAAAATCAATGGCTATGAATTCAACTGTACCTGAATTTTCAGCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAAAGTTTCAATGAAAGAAGTAACCAACATGTGATGAACAATGTTGATTTAGCCCAAAGATCTGTTAATCTACCAAGAGTTTCAAGTAGTCCTTCACTCAAAAACTTTGGATCTCAAATGGGTTACAAAGAGAACAAGAATTCTCCATTGCAACAAGAAAATGAGAGAATGGAAGTGACTAATTCACAAGAGGAATCTACAATCTCTGAGCAAAATACACCAAATGGTGAATTGGGTGTTAAAGCTTCACCTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCCAAAGGAAAAGCTTCAAACTTTATCAATCCTACTACCAAGGGTGTTGAAGGTAGTGGTGAAGATTCAAATGCAAAGAAAAGCAAGTCAAATGAAGGTGAGAAAATTGAGAATGGTGGCATGAATATGGAGGAAGAGTCCAAAGAAGGTAAAAATAATGCAGGGGAAGAAAAACAGAACAAGAGTAATTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAACGTGTGCGGAGGGAAAAAATAAGTGAGAGGATGAAACTTCTTCAGGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGGATGGATTTAAGTATTGAAAGTCTTGTTCTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCTTCATCACCATCCTTTTATGGGCAACAACCTCAGCAAAACCAAGCTATTGCTAATACAAATGGGACACACTGCTCAGTGGACCCATTGGACTCTTCTCTGTGCCATAATCTTGGCATAAATTTACCTTCCCTAAATGGATTTAATGAAGGTGGCTCTCAGTATCCATTAACATTCTCTGAGGAAGACTTAAACACAATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATACACTCTCCAACTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAGCTCTAA 1614 0.3618 MENQFFMNVGFEPLPHSSMPTWQPISSAMEIQQTSLNCSSDQNQDCFFNPNWDNKSTDQNLNFDSALSSIVSSPAATSSPPQNPNNISNENFVMRELLGKLGTFGEISQHSKLNNNIVPMMNHFVKENMQTLGGKSMAMNSTVPEFSADPGFVQRAAKFSCFGSKSFNERSNQHVMNNVDLAQRSVNLPRVSSSPSLKNFGSQMGYKENKNSPLQQENERMEVTNSQEESTISEQNTPNGELGVKASPDMNSRKRKASSSKGKASNFINPTTKGVEGSGEDSNAKKSKSNEGEKIENGGMNMEEESKEGKNNAGEEKQNKSNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRMDLSIESLVLSKDIFQSNNSLQNSIFQLDSSSPSFYGQQPQQNQAIANTNGTHCSVDPLDSSLCHNLGINLPSLNGFNEGGSQYPLTFSEEDLNTIVQMGFGQTSNRTTPIHSPTFNGSNQATQMKIEL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00352 537 CDD bHLH_AtBPE_like 331 416 - -
Trre16g00352 537 MobiDBLite consensus disorder prediction 190 330 - -
Trre16g00352 537 FunFam Basic helix-loop-helix transcription factor 338 410 - -
Trre16g00352 537 MobiDBLite consensus disorder prediction 190 242 - -
Trre16g00352 537 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 214 455 IPR024097 GO:0006355
Trre16g00352 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 410 IPR036638 GO:0046983
Trre16g00352 537 SMART finulus 347 397 IPR011598 GO:0046983
Trre16g00352 537 MobiDBLite consensus disorder prediction 261 278 - -
Trre16g00352 537 Pfam Helix-loop-helix DNA-binding domain 345 392 IPR011598 GO:0046983
Trre16g00352 537 Gene3D - 338 413 IPR036638 GO:0046983
Trre16g00352 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 391 IPR011598 GO:0046983
Trre16g00352 537 Coils Coil 388 408 - -
Trre16g00352 537 MobiDBLite consensus disorder prediction 279 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00352 Trre-Chr16 2556912 2560391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00352 1 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.520 4.03e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00352 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00352 - - gmx:100801233 640.958