Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00350 ATGCTTCGATTTCTTTCAAATGGGTCAAATCTTTTTCAGCATTCTACATTCACCCAGGTAATTATAAATTCCTTGCCAATTTTCACTCCCGCCACCTATTCGACGAAAGTCCCAGCAGAAAATGAGGTTGAATTGCAAAAAGTTAGTGACAATTGGAAGGATGCTACTGAAGTTTTGAGTAAATGGGGTTGTGGTGATGATGATTTGAAGAGAATATTCACTCGTTGCCCTTCAGTACGCAATGCGGATCCTTCTCAGGTTCAGTCGAAACTTTGCTTGCTTAGTGACCTGGGTTTAGGGTCAGCTGAACTTGTGAAGATTATTAATTGCAGGCCTCGATTTTTCAGGACTCGGATGAACATTAAATTTGACGAGAGGCTTGACTCTCTTATGACATTGTTTGAGTCAAGGGAAATGCTTCATAAGGCCATTGCAAGAAACCCTTCATTGCTATGTGAAAATAGCTATAACTTTGAAAGTATTGTTGCACAGTATGAAGAATTGGGTGTGACGAAGAAGGACTTGGTTCAAATGCTGATTTTGCGGCCAACGATCATGTCAAGGACTTCCTTTGACGATGAGAAGATGAAATATATAAGTAGGACTGGGGTTTCTAAGGATGCAAAATTGTACAAATATGTGGTGACATTAATAGGCATCTCTCGCCTGGAAACCATTCGCGAAAAGGTGTTGAATTTTACAAAGTTTGGTTTTTCGGAGGATGAGATACTTGGTCTTTTTGGGAAGTCTCCTCATATTTTGACATTGTCAACTGATAAGGTTCAGAGGAACATGACTTTCGTTTTAGGTACAATGAAGCTTGAAGCTAAGATAATCTTTAAGTGCCCATATCTCTTGTTTGCAAATATGGAGACTATTTTGAAGCCACGGGCACTTCTAGCATTGAAGATACAAGATATGGATTATAAGTTGAAAATACCCTCAATACTCACAGCATTGAGGATGTCAGAGGAGAGGTTTTTAAAATTGTTTGTCAAATGTCATGACAAGGAAATTGCTGATGAATTAATGGAATTTTATAAAAGGACAAAAGAGGTTAAAAGATTAGCAGCTTCATCAAAGAGAATTACTTCTAGAGGATTCCCTTTCTGA 1113 0.3827 MLRFLSNGSNLFQHSTFTQVIINSLPIFTPATYSTKVPAENEVELQKVSDNWKDATEVLSKWGCGDDDLKRIFTRCPSVRNADPSQVQSKLCLLSDLGLGSAELVKIINCRPRFFRTRMNIKFDERLDSLMTLFESREMLHKAIARNPSLLCENSYNFESIVAQYEELGVTKKDLVQMLILRPTIMSRTSFDDEKMKYISRTGVSKDAKLYKYVVTLIGISRLETIREKVLNFTKFGFSEDEILGLFGKSPHILTLSTDKVQRNMTFVLGTMKLEAKIIFKCPYLLFANMETILKPRALLALKIQDMDYKLKIPSILTALRMSEERFLKLFVKCHDKEIADELMEFYKRTKEVKRLAASSKRITSRGFPF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00350 370 Pfam mTERF 57 205 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 Pfam mTERF 131 328 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 PANTHER CGI-12 PROTEIN-RELATED 23 336 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 SMART mt_12 141 171 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 SMART mt_12 105 137 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 SMART mt_12 70 100 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Trre16g00350 370 Gene3D Transcription termination factor 3, mitochondrial 31 197 IPR038538 -
Trre16g00350 370 Gene3D Transcription termination factor 3, mitochondrial 198 346 IPR038538 -
Trre16g00350 370 FunFam Mitochondrial transcription termination factor family protein 123 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00350 Trre-Chr16 2476793 2477905 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre16g00350 mTERF 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00350 K15032 - gmx:100799629 474.552