LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g00349	ATGTATTCATCATCATCTTCATCCACAAATCCTCAATACCTTCACGACGTATTCATCAATTTCAGAGGCGAAGACACTCGCCGCACATTCGTTTCACATCTTTACGCAGTCCTCTCAAATGCCGGAATCAACACTTTCCTCGACAACGAAAAGCTCGAAAAAGGAGAAGAAATTGGACACGAGTTACTTCAAGCAATTGAGGTTTCTCATATATCAATCATAGTTTTCTCAAAAAGTTATGCTGAATCTAGTTGGTGTTTAAATGAATTGGATAAAATTATGGAATGTCGTAGAACTAACGGTCAAGTTGTTTTGCCTGTTTTTTATGATATTGATCCTTCTGTTGTTAGACATCAGAAAGGTGAATTTGGTAAAGCTTTGGAAGTTAGTGCTAAAAGTAGGTATATAATTGAGGAAGTTATGGAAAGAGTTTTGGATAGATGGAAAAAAGTTTTGACTGAAGCTTCTAGTTTGTCTGGTTTTGATGGAAACACTTTCAGGAGTGACCGTGAATTGGTGAATAAAGTTGTTGAGGCCATTTTGCCAAAACTAGACAGCAGCACCTTGCCTATAACTGAATTTCCAGTTGGGTTAGAATCCCATGTGAAGCAAGTGGTTGGGTTGATTGAGAAACAAATGGGCAATGTTTGCATAGTAGGGATCTGGGGCATGGGAGGATCAGGTAAAACAACTGTAGCCAAAGCCGTCTACAATGAAATTCATCGTAGATTTGATTGTACAAGTTTCATCGAAAATATAAGAGAAGTTTGTGAACAGGATACTAGAGGGCATATGCATTTACAACAACAACTTCTTTCAGATGTCCTCAAAACAAAGGAGAAGATACATAGCATTGCGTTGGGGACAAATAGGATCCAAAAAGTGGTTTCTGGAAAAAAAGCACTCGTGGTACTTGATGATGTGACTGATTTTCAGCAAATAAAAGTCCTATGTGGGAATTATAAATGTTTTGGTTCTGGAAGTGTGTTAATTGTTACAACTAGGGATGTACACATACTTAAGTTACTTAAAGTTGTCTCCGTCTATAAAATGGAGGAAATGCACAAAAGCGATTCCCTTGAGCTATTCTCTTGGCATGCTTTTAGGAAAGCAAGTCCTAAAGGAGGCTTTGGTGAACTTTCAAGAAGTGTGGCTGCTTATTGTGGAGGTTTACCTCTGGCTCTTGAAGTCCTTGGATCCTACTTATTTGATAGGACAAAACAAGAATGGACAAGTGTACTATCGAAGTTAGAGAGAATTCCCAATGATCAAGTGCATGAGAAGCTGAGAATAAGCTATGATGGTTTAAAGGATGATATGGTAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGTAAGGACAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAGCTGTCCTCATAGATCGGAGCCTCCTAAAAGTTGAGAAGAATAATAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGCGAAAGTTCCGCAAGAGAGCCAGGGAAGCGTAGTCGATTGTGGTTTCACGACGATGTACATGATGTTTTGACAAAAAATACTGGAACAGAAACTGTTGAGGCACTGATTTTGAGCATGCAAAGGACAGGCAGAGTTAGCTTTAGTACTAATGTTTTCCAAGACATGAAGAAACTGAGACTTTTACAACTTGACCGTGTTGACCTCACCGGAGATTTTGGGTATCTTTCCAAACAACTGAGATGGGTGAATTGGCAACGTTCTACCTTCAGCTCTGTACCCAATGACTTTGATCAGGAAAATCTCGTTGCTTTTGAATTAAAACATAGCAATGTTAAACAAGTTTGGAAGGAAACCAAGTTGATGCAGAAGCTAAAAATTCTCAATCTCAGTCATTCCAGGCACTTGCAAAGCACCCCCGATTTTACAAAATTACCAAATCTAGAAAAACTCATTATGAAGGATTGCCCAAGTTTATCCAATATACACCCGTCCATTGGAGATCTAGAGAATCTTCTTCTCATAAATTTGAAGGATTGTTCAAGTCTTGTCAATCTCCCAAGAAAGATGTATAAATTGAGAAAAGTGAAAACTCTCATCATTTCTGGTTGTTCAAAGATTGTCAAATTGGAAGAAGATATAGCGCAAATGAAATCCTTGACAACTCTAATTGCAGCAAACACTGGTGTCAAACAAGTGCCTTTTTCGATTATTAGATCAAAAAACATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAATGAATTCCTTAGCACGTATTCCCCCATTTGGTGGTATTTCAATGTCTCTTGTTTCCTTGGATGTAGATAGTAATAATTTGGGTTTGATCTATCAATCACCAATACTTAGCAGCGGTTCAAAACTTAGATGTGTTTCGGTACAGTGTCACTCAGAGATTCAACTCAAACAAGAATTGAGAAGATTTCTTGATGAGCTTACTCAGTTGGAAATATCGCTTGCATCCCAAACCTCAGATCTTTCCTTGAAATCTATTTTGATTGGAATGGGAAGTTGCCACACAGTCAACGAGACTCTTGGCAAGAGCTTATCGCAGGGACTGTCAACCAATGATTCAATTGCTTCTTTCCTTCCGGGTAACAATTTTCCTTCTTGGTTAACCTATACATGTGAAGGACCATCGGTATATTTTCAAGTGCCCGAGGATAGTGATTGTGGAATGAAGGGAATAACTTTATGTGTTATTTATTCATCAACACTCGAAAACATCGCAACTGAATGTCTCGCTAGTGTTTTGGTCATTAATTACACAAAATTCACTATTCAGATATATAAGAGAGACACAGTAATCTCCTTTAATGATGAAGATTGGAAGAGTGTAGTATCAAATTTAGAAGTTGGTGACAATGTAGAGATTTTTGTAGCTTTTGGGCATGGATTGACAGTTAAAGAGACGGCTGTTTATCTAATATATGGTCAGTCAAATGCAATGGAAATTGAGCCGCCAGTTACTGTGGAAGTTGAGCCAATACTTGAAGTGGAGGCGCAACTATCACCTGATGTGAAAACGGAGCCATCACCAGGAGTGGAAGCACAATTATCACCTGATGTGAAGAAAACAGAGCCATCACGAGGTGTGGAAGCGCAACCATCAACTGATGTGAAAATGGAGTCACCACTTACTGTCAAGATTGAGCCGTCCCCAAAGACAAATGAGAAAATCTTTGTAAGACTTGCAAAGAGCGTGGGACTTTGTTTTTGCTTGAACCAGAGTCCAAAATTGAGATCTTAG	3339	0.3842	MYSSSSSSTNPQYLHDVFINFRGEDTRRTFVSHLYAVLSNAGINTFLDNEKLEKGEEIGHELLQAIEVSHISIIVFSKSYAESSWCLNELDKIMECRRTNGQVVLPVFYDIDPSVVRHQKGEFGKALEVSAKSRYIIEEVMERVLDRWKKVLTEASSLSGFDGNTFRSDRELVNKVVEAILPKLDSSTLPITEFPVGLESHVKQVVGLIEKQMGNVCIVGIWGMGGSGKTTVAKAVYNEIHRRFDCTSFIENIREVCEQDTRGHMHLQQQLLSDVLKTKEKIHSIALGTNRIQKVVSGKKALVVLDDVTDFQQIKVLCGNYKCFGSGSVLIVTTRDVHILKLLKVVSVYKMEEMHKSDSLELFSWHAFRKASPKGGFGELSRSVAAYCGGLPLALEVLGSYLFDRTKQEWTSVLSKLERIPNDQVHEKLRISYDGLKDDMVKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGIAVLIDRSLLKVEKNNKLGMHDLIRDMGREIVRESSAREPGKRSRLWFHDDVHDVLTKNTGTETVEALILSMQRTGRVSFSTNVFQDMKKLRLLQLDRVDLTGDFGYLSKQLRWVNWQRSTFSSVPNDFDQENLVAFELKHSNVKQVWKETKLMQKLKILNLSHSRHLQSTPDFTKLPNLEKLIMKDCPSLSNIHPSIGDLENLLLINLKDCSSLVNLPRKMYKLRKVKTLIISGCSKIVKLEEDIAQMKSLTTLIAANTGVKQVPFSIIRSKNIGYISLCGYEGLSRDVFPSIIWSWMSPTMNSLARIPPFGGISMSLVSLDVDSNNLGLIYQSPILSSGSKLRCVSVQCHSEIQLKQELRRFLDELTQLEISLASQTSDLSLKSILIGMGSCHTVNETLGKSLSQGLSTNDSIASFLPGNNFPSWLTYTCEGPSVYFQVPEDSDCGMKGITLCVIYSSTLENIATECLASVLVINYTKFTIQIYKRDTVISFNDEDWKSVVSNLEVGDNVEIFVAFGHGLTVKETAVYLIYGQSNAMEIEPPVTVEVEPILEVEAQLSPDVKTEPSPGVEAQLSPDVKKTEPSRGVEAQPSTDVKMESPLTVKIEPSPKTNEKIFVRLAKSVGLCFCLNQSPKLRS	1112

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g00349	1112	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	186	-	-
	Trre16g00349	1112	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	740	IPR044974	GO:0006952
	Trre16g00349	1112	Coils	Coil	828	848	-	-
	Trre16g00349	1112	Gene3D	-	354	437	IPR042197	-
	Trre16g00349	1112	PRINTS	Disease resistance protein signature	388	402	-	-
	Trre16g00349	1112	PRINTS	Disease resistance protein signature	218	233	-	-
	Trre16g00349	1112	PRINTS	Disease resistance protein signature	295	309	-	-
	Trre16g00349	1112	PRINTS	Disease resistance protein signature	626	642	-	-
	Trre16g00349	1112	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	161	IPR035897	-
	Trre16g00349	1112	Gene3D	-	182	348	IPR027417	-
	Trre16g00349	1112	MobiDBLite	consensus disorder prediction	1034	1073	-	-
	Trre16g00349	1112	SMART	till_3	14	158	IPR000157	GO:0007165
	Trre16g00349	1112	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	448	IPR027417	-
	Trre16g00349	1112	ProSiteProfiles	TIR domain profile.	13	184	IPR000157	GO:0007165
	Trre16g00349	1112	Pfam	NB-ARC domain	199	423	IPR002182	GO:0043531
	Trre16g00349	1112	Gene3D	Ribonuclease Inhibitor	526	876	IPR032675	-
	Trre16g00349	1112	Gene3D	-	12	181	IPR035897	-
	Trre16g00349	1112	Pfam	TIR domain	15	188	IPR000157	GO:0007165
	Trre16g00349	1112	SUPERFAMILY	L domain-like	494	847	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g00349	Trre-Chr16	2467660	2473102	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g00349	15	743	WRKY Transcription Factor Family	AT4G12020	29.987	7.55e-83	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g00349	-		-	tpra:123923836	1569.29