Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00344 ATGTCTTCTTCTTCATCATCCTTCACTTCTCAATATGTTTACGACGTGTTCCTCAACTTCAGAGGGGAAGATACTCGTTTCAGTTTTGTTTCTCATCTCCATGCAGCACTCTCAAATGCTGGAGTAAACACTTTTCTTGACGACAAAAAGCTTGAAAAAGGAGCGGAGCTAGGACCAGAACTATTGAGTGCAATACAAGGTTCTCGTATTTCCATAGTTGTTTTCTCTAAAACCTATATCACATCTAGTTGGTGTCTTAAAGAGCTTGAACAAATCATGAAATGCCGCAGAAATTATGGTCAAGTGGTTCTGCCCATTTTTTACCACGTTGACCCATCGGTTTTGCGTCATCAGAAAGATGGTTATGGAAAAGCTTTGCAAGCAACTGCAAAAAGAAGACCATCAGGAGGCGAAATGAGGAAATATGCGTTGACCAATTGGAAGATTGCACTAACTGAAGCTTCAAATATATCTGGTTGGGATACCAAAAAATTCGGGACTGAAGTTGAACTAATTTCTCGAATTGTTGAAGACATTTTGAGAAAACTAGACAGCAGATTATCTAATATTACCGAATATCCAGTTGGATTAGATACCCGTGTGCAACAAGTGATTCAGTTTATTGAAAATCAATCAAGCAAAGTTTGCTTGATTGGGATATGGGGGATGGGTGGATCGGGTAAAACAACAACAGCCAGAGCTATCTACAACCAATTTCATTGCAAATTTGTGGATCACAGTTTCATTGAGAATATTAGAGAAGTTTGTGAAAAGGAAAATAAAGGGATTATTCATTTACAACAACAACAACTTCTTTCAAATGTCTTGAAAACAATTGAAAAGAGATTTATGGGAAAAAGGGCACTCATTGTACTCGATGACGTGAGCACATTTGAGCAAGTAGAAGCCCTATGTGGAAATCGTAAATGTTTTTGTTCAGGAAGTGTATTGATCGTTACATCTAGGGATGTACACATACTTAGGAAGCTTAAAGTTGACTATATCTATAGCATAAAGGAAATGGACGAAATCAAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAACCAAGTCCAAAACATGACTTCAGGGAACTCTCAAGCAGCATAGTTGCTTACTGTAGAGGATTACCACTGGCTCTTGAAGTCATTGGATCTTACTTGCGTGACAGAACAATACAAGAGTGGATAAGTGTACTATCAAAGTTAGAGAGAATTCCTGATGATCAAGTGCATGAGAAACTGAGAATAAGTTATGATGGTTTAAAGAAAGATACAGAAAAGGATATATTTCTTGACATATGTTGTTTTTTTATTGGTAAGGACAGAGCCTATGTTTCAGAGATTATAGATGGTTGTGATCTTTTTGCTGGTATTGGAATAACTGTCCTCATAGAGCGGAGCCTCCTAAAAGTTGAAAAGAATAACAAACTTGGAATGCATGGTTTGCTACGAGATATGGGAAGAGAGATTGTTCGTGAAAGATCAATAAAACTGCCTGGGAAGCGTAGTCGATTGTGGTTTCACAAGGATGCACATAAAGTATTGACAGAAAATTCTGGAACAGAAACTGTGGAAGGATTGGTTTTGAAGTCACAAAGCACCAGCAATGTTTGCATCAAAACTGATACTTTCAAGGAGATGAAGAATCTGAGACTTTTACGACTTGACCATGTTGATCTTACTGGAGCTTTTGAGTATCTTTCTAAAGAACTGAGATGGTTCCATTGGCAGGGATTTACTGGCGAATATATACCTGATGACTTTTATCTGGGAAATCTAGTTGTTTTTGAGTTAAAACATAGCAATATTAAACAAGTTTGGAATGAAACCAAGTTGATGGAGAAGCTGAAAATTCTCAATCTCAGTCATTCCAAGCACTTGACAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGAATTGTCCACGCTTGTCTGAGGTACACCAGTCGATTGGGGATCTGAGGAATCTTATTCTGATAAATTTGAAAGACTGTACAAGTCTTAGTAATCTCCCAGAGAAGATAAATCAACTGAAGTCTTTGACAACTCTCATCCTTTCTGGTTGTTTGAAGATTGACAAGTTGGAAGAAAGCATAGTGCAGATGGAGTCCTTGACAACACTGCTCATAAAAGATACAGGTGTGAAAGAAGTGCCGTATTCATTGGTAAGATTGAAAAGCATCGGGTATATATCTCTATGTGGATATGAAGGATTATCGCATGATATTTTTCATTCTGTCATTCGGTCTTGGATGTCACCAACAATGAATACTTTTCCCCATAATAACTTGGACTTTCTAACACCAATAGTTTTGAGCCTTCCACAACTCAGAACTATTTGGATACAATGTCACTCAGAGAACCAACTAACTCAAGAATTAAAAATAATTTTTGATGATCAGTATTATATTAACTGTGCTGAATTGGAAGCATTGCAAATCCCAAATCTTTCCTTGAGAGCACATTTGATTGGAATGAGTTGCCCAACAGTCATGGATACTCTTGGCAACAGCATATCACAGGGATTAACAAACAATGTTTCGAGCAATTTTTTCCTTCCTGGTGGCAATCATGCTTCTTTCTTAGCCTATACAGGTGAAGGACCTTCAGCACCTTTCAAAGTTCCTATGGATATTGATTGTCACATGGAGGGAATAGTCTTGCATGTTGTTTATTTATCAACATCTGAAAACATGGCAGCTGACTCTCTTATTAGTGTCTTGATCATTAATTACACAAAGTGCACCATCCATATTTACAAGCGAGACACGGTCATGTCATTTAATGATGAAGATTGGAAGAATGTAGCATCAAATCTAGGACCTGGTGACGATGTGAATATTTATGTAGTGTTCGGGCATGGATTGATTGTTAAGAAAACAACTGTTTATCTAATATCCAGCCAGCCAATTATTATGGAAGTTGATGATGCTAACATGAAAATGGAGCCATCAGAGGAAGTGAACGTGCTGCCGTACCGTGAAGTGAAGGTGCAGTCATCACCTATCATGAAAATGAAGCAATCACAAAAGCCCAATAAAAGTATATTTACAAGTCTTCCAAACAGAATGAGTGCATTTTTATGCTTGAACAATTTTTGA 3126 0.3749 MSSSSSSFTSQYVYDVFLNFRGEDTRFSFVSHLHAALSNAGVNTFLDDKKLEKGAELGPELLSAIQGSRISIVVFSKTYITSSWCLKELEQIMKCRRNYGQVVLPIFYHVDPSVLRHQKDGYGKALQATAKRRPSGGEMRKYALTNWKIALTEASNISGWDTKKFGTEVELISRIVEDILRKLDSRLSNITEYPVGLDTRVQQVIQFIENQSSKVCLIGIWGMGGSGKTTTARAIYNQFHCKFVDHSFIENIREVCEKENKGIIHLQQQQLLSNVLKTIEKRFMGKRALIVLDDVSTFEQVEALCGNRKCFCSGSVLIVTSRDVHILRKLKVDYIYSIKEMDEIKSLELFSWHAFREPSPKHDFRELSSSIVAYCRGLPLALEVIGSYLRDRTIQEWISVLSKLERIPDDQVHEKLRISYDGLKKDTEKDIFLDICCFFIGKDRAYVSEIIDGCDLFAGIGITVLIERSLLKVEKNNKLGMHGLLRDMGREIVRERSIKLPGKRSRLWFHKDAHKVLTENSGTETVEGLVLKSQSTSNVCIKTDTFKEMKNLRLLRLDHVDLTGAFEYLSKELRWFHWQGFTGEYIPDDFYLGNLVVFELKHSNIKQVWNETKLMEKLKILNLSHSKHLTSTPDFSKLPNLEKLIMKNCPRLSEVHQSIGDLRNLILINLKDCTSLSNLPEKINQLKSLTTLILSGCLKIDKLEESIVQMESLTTLLIKDTGVKEVPYSLVRLKSIGYISLCGYEGLSHDIFHSVIRSWMSPTMNTFPHNNLDFLTPIVLSLPQLRTIWIQCHSENQLTQELKIIFDDQYYINCAELEALQIPNLSLRAHLIGMSCPTVMDTLGNSISQGLTNNVSSNFFLPGGNHASFLAYTGEGPSAPFKVPMDIDCHMEGIVLHVVYLSTSENMAADSLISVLIINYTKCTIHIYKRDTVMSFNDEDWKNVASNLGPGDDVNIYVVFGHGLIVKKTTVYLISSQPIIMEVDDANMKMEPSEEVNVLPYREVKVQSSPIMKMKQSQKPNKSIFTSLPNRMSAFLCLNNF 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00344 1041 PRINTS Disease resistance protein signature 375 389 - -
Trre16g00344 1041 PRINTS Disease resistance protein signature 613 629 - -
Trre16g00344 1041 PRINTS Disease resistance protein signature 282 296 - -
Trre16g00344 1041 PRINTS Disease resistance protein signature 217 232 - -
Trre16g00344 1041 Gene3D - 341 424 IPR042197 -
Trre16g00344 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 435 IPR027417 -
Trre16g00344 1041 Pfam NB-ARC domain 199 407 IPR002182 GO:0043531
Trre16g00344 1041 Gene3D - 7 185 IPR035897 -
Trre16g00344 1041 Gene3D Ribonuclease Inhibitor 512 858 IPR032675 -
Trre16g00344 1041 SMART till_3 13 157 IPR000157 GO:0007165
Trre16g00344 1041 ProSiteProfiles TIR domain profile. 12 183 IPR000157 GO:0007165
Trre16g00344 1041 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 160 IPR035897 -
Trre16g00344 1041 SUPERFAMILY L domain-like 536 828 - -
Trre16g00344 1041 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 725 IPR044974 GO:0006952
Trre16g00344 1041 Pfam TIR domain 14 189 IPR000157 GO:0007165
Trre16g00344 1041 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 185 - -
Trre16g00344 1041 Gene3D - 186 335 IPR027417 -
Trre16g00344 1041 SUPERFAMILY "Winged helix" DNA-binding domain 411 517 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00344 Trre-Chr16 2427793 2431504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00344 8 733 WRKY Transcription Factor Family AT4G12020 30.144 1.06e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00344 - - mtr:11424959 1728.38