Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00343 ATGGGAAGAGAAATTGTTCGCGAAAGTTCAACAGAAGAACCTGGGAAGCGTAGTCGATTGTGGTTTCATGAAGATGTACATGTTATTTTGACCACAAATTCTGGAACAAAATCTGTAGAGGGATTGGTTTTGAAGTCACAAGGAACTGACAGAGTTTGCTTCAGTACTGATTCTTTCAAGGAGATGAAGAAACTCAGATTTCTACAACTTGATTGTGTTGACCTCATTGGAGACTATGGGAACCTTTCTAAAGAACTGAGATGGGTCCATTGGCAAGGATTTACCTCCAACTATATACCTGATGACTTTCATCAAGGAAATCTAGTTCTGTTGAATCTAAAAATTCTCAATCTCAGCCATTCAAGATACTTGAAAAGATCCCCTGACTTTTCAAAATTACCAAATCTTGAAAAGATTATTATGAAGGATTGTCCAACTTCTATTGATGTACAGAAAAATAACTTGGGATTTCGATCACCAATGATCAGAAGGCTTTTACGATTGAGAACTATTGTGGTACAATTCCACTCAAAGAATCAACTAACTCAAGAATTACAAAGAATTCTTGATGATCAATATGATGTTAGTTATACCCAAGTGGAAACATCACATGCATCACAAATCTCAAATCATTCCTTGAGATCACTTTTGATTGGAATGGGAAGTTTCCACATAGTCATTGATACTCTTAGCAAGAGCATATCACAGGGATTAACAACCAATGATTCTGGTAAATTTTTCCTTCCGGGGGACAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCTTCAATACATTTTCAAGTGCCTGAGGATAGTGATTGCTGCATGAAGGGAATAACTTTATGTGTTGTTTATTCATCAACATCTGAAAACACGGCAACTGAATGTCTCGCTAGTATTTTAATAATTAATTACACAAAATTCACTGTTCATATATACAAGCGAGATACAATAATGTCCTTTAATGATGAAGATTGGAAGAATGTAACATCAAATCTAGGACCTGGTGACAATGTTGAGATATCTGTAGCTTTTGGGCATGGGTTGATTGTTAAGGAGACAGCTGTCTATCTAATATATGGCCAGTCAATTACTATGGAAGTTGATGCTGATGAGAAAGATGTTTTGAAGAATGATGTTGATGCTAACTCCAATCAAAGGGATATGCATGAGGCAAGTAAAAGACACGAGGAAATTTTGAATCAATCAGAGGATGCTGCTGAGAAAGGGGCTTTGGTGAATGATGTTGATGTCAACAGAAGGATGGCTGAACAAATTTCATATGCTGTTGCTGAAAGGCTCTTTAACAGGTTGGCTTCTGCAGCCTTTCGTGAACATGGACAGATTTATGGTGTTACGGATGAGTTGGAAAGGCTTAAGAACTCTGTTGAACACATAAAAGTTGTGCTCCTTGATGCCCAAGAGAAACAAGAACAAAATTGTGCTGTCCGAAGTTGGATAAGAAGGCTTGAAGATTTGCTTCATCTTGCAGATGACTTGCTAGATGAGTTTATTATTGAAGGTATGAGATACCAAGTGGATGCAGGTGATAAGAAAAAAATGACATGGGTATTTCGTTCATTATCTTCAAACCATAGTTATATTCGCCGAACAATGGTTCCTAAAATTGGAAAAATACAAAAAAAGTTTGATGATGTGGTGGAAGAAATGGTAAAGTTGAATTTAAGCCCAAAAGCAATGGTGGTTAAGCAAACTGACAATTTGAGGAGCAAATCTATTTCTTTTTTGTTAGAATCAGAAATCACTGGAAGGTTAGATGATAAAAAGGAGATTATAAATCTCTTGAGGCAACCACATGGAAATATCTCGTCAATTGCTATTGTAGCTGGAAATGATTGTTGTTACTTGGATAGTGAGGCAAAAAGATGTGTACAAAGACCCGTGCATGTATTGTTGGAACCCAGTGCAGTTCATTTGTTGGACTCATTGGATGGAAGCAGGCTGCGAACTTTGATTTTGTTGTCTTCCAATGAGGTGGAGGAACTTAATGGGGATGAATTGCTAGTTATTACCAAATTCAAACACTTACGTGCCTTGAAGCTGTCATATTGTTCTTTAAGCAAGTTATCTAGTTCAATTGGAAAATTGAAACATTTAAGATATCTTAACTTATCACACTGTAGAGGACTGGGAAGTCTTTACAAATCCTTAAGCAGTCTTGTTTTGTTACAAACACTAATATTGACACCTAATGAAAAAGTGGAGTTCTCTACAAAGGTTGTATCAAAATTAATCAATCTGAGACACCTTCACATCTCTGATTGGGAAACCTCCAGAGACGAGACGCCATTTGGATTTGTAAAATTGAGCATTTGGCAGCATAAGGGGATGATTTTCTCAAACTGGATTTCTACACTGACAAATATTGTTGAAATCTCTTTCTTTTTGTGTGGAAGTCTCAAGTGTCTCCCACCATTGGAGCGTCTCCCATTCCTTAAGTCACTTCACCTAAGTTTCCTTGAAGAACTGGAGTACATATACTATGAACAAGATTATTCTTCAGCCTTCTTTCCCTCTTTGGAGAGCCTCTCTTTGCAGTTTTGTTATAAGTTGAAGGGATGGTGGAGGATGGGAGATGATTTCAACAATACCAACTGTTCACAAAATCTCTCCTTGCCTCCCTTTCCTCGTCTTTCTCAATTATCAATCATAGGATGTCTGATGTTGACTTGCATGCCTACCTTTCCAAATCTTGAGAGCGGACTGGAATTGTACGATAGTAGGGTGGAAACGTTGGTAGCTACACTGAACACCGTAGCATTAGAAAGTTTGAGCGACTTCCCTCCCCTTTCCATGCTCAAATCCTTGTACATTGACGGAGTAAGCCTGAATGTGAAAAGCATCCCAGAGGATTGGATGCAAAATCTTACTTCTCTCCAGCTTCTTCAAATTAATTGGTTTTCACGTCAAGCATTTCAGGAAATCGAAACTTGGTTTAAGAATGACTTCAGGTCTCTTCCTTCTCTACAAACAATTGCCTTTCATAATTGTGAAGATCTAGAGGCATTGCCAGATTGGATATGCAACCTCTCACCGCTTCAGCATCTTAGGGTGTACGATTGCATAAATTTGGCATCGCTTCCTGAACGAATGCCCTGTTTAACCAATTTACAGACCCTAGAAATCATTGGATGTCCCCTCTTAGTTGAAGAATGTCAGACACAAACAGGTGAAACTTGGCTCAAAATTGGTCATGTCCCAAAGATAATCTTATCATCTCTTCATTAA 3255 0.3797 MGREIVRESSTEEPGKRSRLWFHEDVHVILTTNSGTKSVEGLVLKSQGTDRVCFSTDSFKEMKKLRFLQLDCVDLIGDYGNLSKELRWVHWQGFTSNYIPDDFHQGNLVLLNLKILNLSHSRYLKRSPDFSKLPNLEKIIMKDCPTSIDVQKNNLGFRSPMIRRLLRLRTIVVQFHSKNQLTQELQRILDDQYDVSYTQVETSHASQISNHSLRSLLIGMGSFHIVIDTLSKSISQGLTTNDSGKFFLPGDNYPSWLAYTGEGPSIHFQVPEDSDCCMKGITLCVVYSSTSENTATECLASILIINYTKFTVHIYKRDTIMSFNDEDWKNVTSNLGPGDNVEISVAFGHGLIVKETAVYLIYGQSITMEVDADEKDVLKNDVDANSNQRDMHEASKRHEEILNQSEDAAEKGALVNDVDVNRRMAEQISYAVAERLFNRLASAAFREHGQIYGVTDELERLKNSVEHIKVVLLDAQEKQEQNCAVRSWIRRLEDLLHLADDLLDEFIIEGMRYQVDAGDKKKMTWVFRSLSSNHSYIRRTMVPKIGKIQKKFDDVVEEMVKLNLSPKAMVVKQTDNLRSKSISFLLESEITGRLDDKKEIINLLRQPHGNISSIAIVAGNDCCYLDSEAKRCVQRPVHVLLEPSAVHLLDSLDGSRLRTLILLSSNEVEELNGDELLVITKFKHLRALKLSYCSLSKLSSSIGKLKHLRYLNLSHCRGLGSLYKSLSSLVLLQTLILTPNEKVEFSTKVVSKLINLRHLHISDWETSRDETPFGFVKLSIWQHKGMIFSNWISTLTNIVEISFFLCGSLKCLPPLERLPFLKSLHLSFLEELEYIYYEQDYSSAFFPSLESLSLQFCYKLKGWWRMGDDFNNTNCSQNLSLPPFPRLSQLSIIGCLMLTCMPTFPNLESGLELYDSRVETLVATLNTVALESLSDFPPLSMLKSLYIDGVSLNVKSIPEDWMQNLTSLQLLQINWFSRQAFQEIETWFKNDFRSLPSLQTIAFHNCEDLEALPDWICNLSPLQHLRVYDCINLASLPERMPCLTNLQTLEIIGCPLLVEECQTQTGETWLKIGHVPKIILSSLH 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00343 1084 Gene3D Ribonuclease Inhibitor 25 240 IPR032675 -
Trre16g00343 1084 Gene3D Ribonuclease Inhibitor 648 908 IPR032675 -
Trre16g00343 1084 Gene3D Ribonuclease Inhibitor 909 1068 IPR032675 -
Trre16g00343 1084 Coils Coil 391 411 - -
Trre16g00343 1084 Pfam Rx N-terminal domain 434 519 IPR041118 -
Trre16g00343 1084 Gene3D - 433 541 - -
Trre16g00343 1084 Coils Coil 458 478 - -
Trre16g00343 1084 SUPERFAMILY L domain-like 50 182 - -
Trre16g00343 1084 SUPERFAMILY L domain-like 671 1057 - -
Trre16g00343 1084 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 678 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00343 Trre-Chr16 2418426 2424280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00343 2 144 WRKY Transcription Factor Family AT4G12020 29.834 3.76e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00343 - - tpra:123923836 803.512