Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00342 ATGGGAAGAGAAATTGTTCGCGAAAGTTCAACAGAAGAACCTGGGAAGCGTAGTCGATTGTGGTTTCATGAAGATGTACATGTTATTTTGACCACAAATTCTGGAACAAAATCTGTAGAGGGATTGGTTTTGAAGTCACAAGGAACTGACAGAGTTTGCTTCAGTACTGATTCTTTCAAGGAGATGAAGAAACTCAGATTTCTACAACTTGATTGTGTTGACCTCATTGGAGACTATGGGAACCTTTCTAAAGAACTGAGATGGGTCCATTGGCAAGGATTTACCTCCAACTATATACCTGATGACTTTCATCAAGGAAATCTAGTTGTTTTTGAATTAAAACACAGCAATATCAAACAAGTATGGAATGAAACCAAGGTTCTGTTGAATCTAAAAATTCTCAATCTCAGCCATTCAAGATACTTGAAAAGATCCCCTGACTTTTCAAAATTACCAAATCTTGAAAAGATTATTATGAAGGATTGTCCAACTTCTATTGATGTACAGAAAAATAACTTGGGATTTCGATCACCAATGATCAGAAGGCTTTTACGATTGAGAACTATTGTGGTACAATTCCACTCAAAGAATCAACTAACTCAAGAATTACAAAGAATTCTTGATGATCAATATGATGTTAGTTATACCCAAGTGGAAACATCACATGCATCACAAATCTCAAATCATTCCTTGAGATCACTTTTGATTGGAATGGGAAGTTTCCACATAGTCATTGATACTCTTAGCAAGAGCATATCACAGGGATTAACAACCAATGATTCTGGTAAATTTTTCCTTCCGGGGGACAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCTTCAATACATTTTCAAGTGCCTGAGGATAGTGATTGCTGCATGAAGGGAATAACTTTATGTGTTGTTTATTCATCAACATCTGAAAACACGGCAACTGAATGTCTCGCTAGTATTTTAATAATTAATTACACAAAATTCACTGTTCATATATACAAGCGAGATACAATAATGTCCTTTAATGATGAAGATTGGAAGAATGTAACATCAAATCTAGGACCTGGTGACAATGTTGAGATATCTGTAGCTTTTGGGCATGGGTTGATTGTTAAGGAGACAGCTGTCTATCTAATATATGGCCAGTCAATTACTATGGAAGTTGATGCTGATGAGAAAGATGTTTTGAAGAATGATGTTGATGCTAACTCCAATCAAAGGGATATGCATGAGGCAAGTAAAAGACACGAGGAAATTTTGAATCAATCAGAGGATGCTGCTGAGAAAGGGGCTTTGGTGAATGATGTTGATGTCAACAGAAGGATGGCTGAACAAATTTCATATGCTGTTGCTGAAAGGCTCTTTAACAGGTTGGCTTCTGCAGCCTTTCGTGAACATGGACAGATTTATGGTGTTACGGATGAGTTGGAAAGGCTTAAGAACTCTGTTGAACACATAAAAGTTGTGCTCCTTGATGCCCAAGAGAAACAAGAACAAAATTGTGCTGTCCGAAGTTGGATAAGAAGGCTTGAAGATTTGCTTCATCTTGCAGATGACTTGCTAGATGAGTTTATTATTGAAGGTATGAGATACCAAGTGGATGCAGGTGATAAGAAAAAAATGACATGGGTATTTCGTTCATTATCTTCAAACCATAGTTATATTCGCCGAACAATGGTTCCTAAAATTGGAAAAATACAAAAAAAGTTTGATGATGTGGTGGAAGAAATGGTAAAGTTGAATTTAAGCCCAAAAGCAATGGTGGTTAAGCAAACTGACAATTTGAGGAGCAAATCTATTTCTTTTTTGTTAGAATCAGAAATCACTGGAAGGTTAGATGATAAAAAGGAGATTATAAATCTCTTGAGGCAACCACATGGAAATATCTCGTCAATTGCTATTGTAGCTGGAAATGATTGTTGTTACTTGGATAGTGAGGCAAAAAGATGTGTACAAAGACCCGTGCATGTATTGTTGGAACCCAGTGCAGTTCATTTGTTGGACTCATTGGATGGAAGCAGGCTGCGAACTTTGATTTTGTTGTCTTCCAATGAGGTGGAGGAACTTAATGGGGATGAATTGCTAGTTATTACCAAATTCAAACACTTACGTGCCTTGAAGCTGTCATATTGTTCTTTAAGCAAGTTATCTAGTTCAATTGGAAAATTGAAACATTTAAGATATCTTAACTTATCACACTGTAGAGGACTGGGAAGTCTTTACAAATCCTTAAGCAGTCTTGTTTTGTTACAAACACTAATATTGACACCTAATGAAAAAGTGGAGTTCTCTACAAAGGTTGTATCAAAATTAATCAATCTGAGACACCTTCACATCTCTGATTGGGAAACCTCCAGAGACGAGACGCCATTTGGATTTGTAAAATTGAGCATTTGGCAGCATAAGGGGATGATTTTCTCAAACTGGATTTCTACACTGACAAATATTGTTGAAATCTCTTTCTTTTTGTGTGGAAGTCTCAAGTGTCTCCCACCATTGGAGCGTCTCCCATTCCTTAAGTCACTTCACCTAAGTTTCCTTGAAGAACTGGAGTACATATACTATGAACAAGATTATTCTTCAGCCTTCTTTCCCTCTTTGGAGAGCCTCTCTTTGCAGTTTTGTTATAAGTTGAAGGGATGGTGGAGGATGGGAGATGATTTCAACAATACCAACTGTTCACAAAATCTCTCCTTGCCTCCCTTTCCTCGTCTTTCTCAATTATCAATCATAGGATGTCTGATGTTGACTTGCATGCCTACCTTTCCAAATCTTGAGAGCGGACTGGAATTGTACGATAGTAGGGTGGAAACGTTGGTAGCTACACTGAACACCGTAGCATTAGAAAGTTTGAGCGACTTCCCTCCCCTTTCCATGCTCAAATCCTTGTACATTGACGGAGTAAGCCTGAATGTGAAAAGCATCCCAGAGGATTGGATGCAAAATCTTACTTCTCTCCAGCTTCTTCAAATTAATTGGTTTTCACGTCAAGCATTTCAGGAAATCGAAACTTGGTTTAAGAATGACTTCAGGTCTCTTCCTTCTCTACAAACAATTGCCTTTCATAATTGTGAAGATCTAGAGGCATTGCCAGATTGGATATGCAACCTCTCACCGCTTCAGCATCTTAGGGTGTACGATTGCATAAATTTGGCATCGCTTCCTGAACGAATGCCCTGTTTAACCAATTTACAGACCCTAGAAATCATTGGATGTCCCCTCTTAGTTGAAGAATGTCAGACACAAACAGGTGAAACTTGGCTCAAAATTGGTCATGTCCCAAAGATAATCTTATCATCTCTTCATTAA 3309 0.3784 MGREIVRESSTEEPGKRSRLWFHEDVHVILTTNSGTKSVEGLVLKSQGTDRVCFSTDSFKEMKKLRFLQLDCVDLIGDYGNLSKELRWVHWQGFTSNYIPDDFHQGNLVVFELKHSNIKQVWNETKVLLNLKILNLSHSRYLKRSPDFSKLPNLEKIIMKDCPTSIDVQKNNLGFRSPMIRRLLRLRTIVVQFHSKNQLTQELQRILDDQYDVSYTQVETSHASQISNHSLRSLLIGMGSFHIVIDTLSKSISQGLTTNDSGKFFLPGDNYPSWLAYTGEGPSIHFQVPEDSDCCMKGITLCVVYSSTSENTATECLASILIINYTKFTVHIYKRDTIMSFNDEDWKNVTSNLGPGDNVEISVAFGHGLIVKETAVYLIYGQSITMEVDADEKDVLKNDVDANSNQRDMHEASKRHEEILNQSEDAAEKGALVNDVDVNRRMAEQISYAVAERLFNRLASAAFREHGQIYGVTDELERLKNSVEHIKVVLLDAQEKQEQNCAVRSWIRRLEDLLHLADDLLDEFIIEGMRYQVDAGDKKKMTWVFRSLSSNHSYIRRTMVPKIGKIQKKFDDVVEEMVKLNLSPKAMVVKQTDNLRSKSISFLLESEITGRLDDKKEIINLLRQPHGNISSIAIVAGNDCCYLDSEAKRCVQRPVHVLLEPSAVHLLDSLDGSRLRTLILLSSNEVEELNGDELLVITKFKHLRALKLSYCSLSKLSSSIGKLKHLRYLNLSHCRGLGSLYKSLSSLVLLQTLILTPNEKVEFSTKVVSKLINLRHLHISDWETSRDETPFGFVKLSIWQHKGMIFSNWISTLTNIVEISFFLCGSLKCLPPLERLPFLKSLHLSFLEELEYIYYEQDYSSAFFPSLESLSLQFCYKLKGWWRMGDDFNNTNCSQNLSLPPFPRLSQLSIIGCLMLTCMPTFPNLESGLELYDSRVETLVATLNTVALESLSDFPPLSMLKSLYIDGVSLNVKSIPEDWMQNLTSLQLLQINWFSRQAFQEIETWFKNDFRSLPSLQTIAFHNCEDLEALPDWICNLSPLQHLRVYDCINLASLPERMPCLTNLQTLEIIGCPLLVEECQTQTGETWLKIGHVPKIILSSLH 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00342 1102 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 759 IPR044974 GO:0006952
Trre16g00342 1102 Gene3D Ribonuclease Inhibitor 924 1086 IPR032675 -
Trre16g00342 1102 SUPERFAMILY L domain-like 50 200 - -
Trre16g00342 1102 Coils Coil 409 429 - -
Trre16g00342 1102 Gene3D - 451 559 - -
Trre16g00342 1102 SUPERFAMILY L domain-like 689 1075 - -
Trre16g00342 1102 Coils Coil 476 496 - -
Trre16g00342 1102 Gene3D Ribonuclease Inhibitor 659 923 IPR032675 -
Trre16g00342 1102 Pfam Rx N-terminal domain 452 537 IPR041118 -
Trre16g00342 1102 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00342 Trre-Chr16 2418426 2424280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00342 2 162 WRKY Transcription Factor Family AT4G12020 32.044 5.11e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00342 - - tpra:123923836 803.512