Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00340 ATGGCACCAAACGCTGCGGTGGTGAAACAAGCGGAGCTGTTGAGAAACGACGGTAATCATTACTTCAAGAAAGCCCGTTTTGGTGCCGCCATCGATGCATACACTGAGGCAATAACGCTTTGCCCTAATGTTCCGGTTTATTTTACGAATCGTGCTCTGTGCCATCTCAAGCGCAATGATTGGGAGAGGGTTGAGGAAGACTGTAGAAGGGCAATTCAGCTGGACAGCAATTCGGTTAAGGCACACTATATGTTGGGTCTTGCGTTGCTAGAGAAAAAAGAACTTACGAAAGGAATCAAAGAATTGGAAAGGGCTTTGAATCTTGGGAGAGGGGCCAATCCAAAGGGCTATATGGTAGAACAAATATGGAAAGTGCTCGCAAAGGCAAAATACAACGAGTGGGAACGTTCTTCATCCCAACGATCATGGGAATTGCAGAACTTAAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTCGAAGTCTCTGAGATGGAAGGATTTGTAGATGATGCTACAACTTCCCATTTGAAACAGCTGGAGGCTTTAGAAACAGTCTTCGAAAAAGCTGCAGAGGATGACACACCTTCTGAGGTGCCAGATTATCTATGCTGTAGAATAACACTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAAAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTGGATTTGATCCGATCACGAGGGAACCACTTGATTCATCACAACTAGTACCAAATTTAGCCATCAAGGAAGCTGTCCAGGAATACTTGGAAAAACATGGATGGGCTTACAAGATAGATTAA 837 0.4337 MAPNAAVVKQAELLRNDGNHYFKKARFGAAIDAYTEAITLCPNVPVYFTNRALCHLKRNDWERVEEDCRRAIQLDSNSVKAHYMLGLALLEKKELTKGIKELERALNLGRGANPKGYMVEQIWKVLAKAKYNEWERSSSQRSWELQNLKEACESALKEKHFLEVSEMEGFVDDATTSHLKQLEALETVFEKAAEDDTPSEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGGFDPITREPLDSSQLVPNLAIKEAVQEYLEKHGWAYKID 278
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00340 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Trre16g00340 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Trre16g00340 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Trre16g00340 278 Coils Coil 145 165 - -
Trre16g00340 278 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Trre16g00340 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Trre16g00340 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Trre16g00340 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Trre16g00340 278 CDD RING-Ubox_CHIP 201 271 IPR045202 -
Trre16g00340 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 277 IPR013083 -
Trre16g00340 278 SUPERFAMILY RING/U-box 193 275 - -
Trre16g00340 278 Gene3D Tetratricopeptide repeat domain 6 141 IPR011990 GO:0005515
Trre16g00340 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 276 IPR045200 GO:0000209|GO:0061630
Trre16g00340 278 SUPERFAMILY TPR-like 9 108 IPR011990 GO:0005515
Trre16g00340 278 Pfam U-box domain 201 273 IPR003613 GO:0004842|GO:0016567
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g00340 Trre-Chr16 2399383 2402869 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00340 11 277 U-box Gene Family AT3G07370 70.037 7.70e-141 395
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00340 K09561 - gmx:100796519 469.544