Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g00340 | ATGGCACCAAACGCTGCGGTGGTGAAACAAGCGGAGCTGTTGAGAAACGACGGTAATCATTACTTCAAGAAAGCCCGTTTTGGTGCCGCCATCGATGCATACACTGAGGCAATAACGCTTTGCCCTAATGTTCCGGTTTATTTTACGAATCGTGCTCTGTGCCATCTCAAGCGCAATGATTGGGAGAGGGTTGAGGAAGACTGTAGAAGGGCAATTCAGCTGGACAGCAATTCGGTTAAGGCACACTATATGTTGGGTCTTGCGTTGCTAGAGAAAAAAGAACTTACGAAAGGAATCAAAGAATTGGAAAGGGCTTTGAATCTTGGGAGAGGGGCCAATCCAAAGGGCTATATGGTAGAACAAATATGGAAAGTGCTCGCAAAGGCAAAATACAACGAGTGGGAACGTTCTTCATCCCAACGATCATGGGAATTGCAGAACTTAAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTCGAAGTCTCTGAGATGGAAGGATTTGTAGATGATGCTACAACTTCCCATTTGAAACAGCTGGAGGCTTTAGAAACAGTCTTCGAAAAAGCTGCAGAGGATGACACACCTTCTGAGGTGCCAGATTATCTATGCTGTAGAATAACACTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAAAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTGGATTTGATCCGATCACGAGGGAACCACTTGATTCATCACAACTAGTACCAAATTTAGCCATCAAGGAAGCTGTCCAGGAATACTTGGAAAAACATGGATGGGCTTACAAGATAGATTAA | 837 | 0.4337 | MAPNAAVVKQAELLRNDGNHYFKKARFGAAIDAYTEAITLCPNVPVYFTNRALCHLKRNDWERVEEDCRRAIQLDSNSVKAHYMLGLALLEKKELTKGIKELERALNLGRGANPKGYMVEQIWKVLAKAKYNEWERSSSQRSWELQNLKEACESALKEKHFLEVSEMEGFVDDATTSHLKQLEALETVFEKAAEDDTPSEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGGFDPITREPLDSSQLVPNLAIKEAVQEYLEKHGWAYKID | 278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g00340 | 278 | SMART | tpr_5 | 79 | 112 | IPR019734 | GO:0005515 | |
| Trre16g00340 | 278 | SMART | tpr_5 | 45 | 78 | IPR019734 | GO:0005515 | |
| Trre16g00340 | 278 | SMART | tpr_5 | 11 | 44 | IPR019734 | GO:0005515 | |
| Trre16g00340 | 278 | Coils | Coil | 145 | 165 | - | - | |
| Trre16g00340 | 278 | Pfam | Tetratricopeptide repeat | 80 | 108 | IPR019734 | GO:0005515 | |
| Trre16g00340 | 278 | ProSiteProfiles | TPR repeat profile. | 11 | 44 | IPR019734 | GO:0005515 | |
| Trre16g00340 | 278 | ProSiteProfiles | U-box domain profile. | 200 | 274 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre16g00340 | 278 | SMART | Ubox_2 | 204 | 267 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre16g00340 | 278 | CDD | RING-Ubox_CHIP | 201 | 271 | IPR045202 | - | |
| Trre16g00340 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 277 | IPR013083 | - | |
| Trre16g00340 | 278 | SUPERFAMILY | RING/U-box | 193 | 275 | - | - | |
| Trre16g00340 | 278 | Gene3D | Tetratricopeptide repeat domain | 6 | 141 | IPR011990 | GO:0005515 | |
| Trre16g00340 | 278 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 8 | 276 | IPR045200 | GO:0000209|GO:0061630 | |
| Trre16g00340 | 278 | SUPERFAMILY | TPR-like | 9 | 108 | IPR011990 | GO:0005515 | |
| Trre16g00340 | 278 | Pfam | U-box domain | 201 | 273 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g00340 | Trre-Chr16 | 2399383 | 2402869 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g00340 | 11 | 277 | U-box Gene Family | AT3G07370 | 70.037 | 7.70e-141 | 395 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g00340 | K09561 | - | gmx:100796519 | 469.544 |