Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00338 ATGAACAGCAGCGAAAACAACCAAAACAGCACAGTTAAATCATTAGATTTCAATAACCTCAAAGTTATCTCCGCAGTAGGACGCGGCGCCAAAGGCGTCGTGTTCCTCGCAACAACCAGTAACCGGTCATCCAACGAGTGTGTAGCTCTGAAAGTAATATCAAAAGATCATATAAATCAAAAGAAATCGAAGAACAATCCAGAAGGTTCTGGAGAGTATAAGAGAGCGTCATTTGAACAAGAAGTGCTACGTCATTTTGATCATCCACTTTTGCCACGGTTACGTGGTGTTTTCGAAACAGAGAAAATCGTTGGATTCGCCATTGATTATTGCCATGGCGGTAACCTCCATTCTCTCCGAAAGAAACAATCTGAGAAAATGTTCTCCAATGACGCCATTAGGTTTTACGCAGCTGAATTGGTTCTAGCATTGGAGTATCTTCATGATTTAGGAATAGTGTATAGAGATTTGAAGCCAGATAACGTGATGATTCAAGAAAACGGTCACATAATGCTAGTAGATTTCGATCTATCTACAAAGCTGAAACCTAAATCGCCACTTCAATCACTGAGTCAAAACTCGTCAGATAGATCTAATTCTTTGAAGGAGAAACACGCGAAGAAGCGATTATTCTCGCCATTCTACAGATGTAACTCGGGGATCTCGCCGTGTGACTCGGATTTTGAATCACAACAGAGTGTGAACTCAGAAAGGAAGAACGAGTCGGAATCGGTTGAGAAATCGAAATCTTTCGTTGGAACGGAAGATTACGTGGCACCTGAAATTGTAAACGGAAAAGGTCACGGTTTCGAAGTTGATTGGTGGTCGTTAGGTGTCGTTTTGTACGAAATGTTGTACGGAACGACGCCGTTTAATGGAATAAATAGAAAAGAAACGTTTTACAGGATTTTGTCAAAAGAACCTGAGTTAACTGGAGAGAAAACGGCGTTAAGGGATTTGATTAGGAGATTATTGGAAAAGGATCCTAACCGTAGGATCAAGGTTGATGAAATTAAGGGTCATGATTTCTTTAAAGGAGTAAAGTGGGACACGGTGTTGCAATTGGCGAGACCACCTTATATTCCTCCTTTGATTGAAGTTGAAAATGAAAAAACTGTGGGGTATAGTAAAAATTATGTGGAGGTGTTTGTTCATGAGGTGTTTTTTCCTAAGGGTGATGATATTAATGAAGAGAAAAAGAATAATAAAATGGGAGAAAAGAAGGGTAATGGTGAGGAAAAGAGGGTGTGGGTTGATAAGTTGAGTAGTAGTCTCAATGAGGATGATGATTTTTTAATTTTTTGA 1305 0.3962 MNSSENNQNSTVKSLDFNNLKVISAVGRGAKGVVFLATTSNRSSNECVALKVISKDHINQKKSKNNPEGSGEYKRASFEQEVLRHFDHPLLPRLRGVFETEKIVGFAIDYCHGGNLHSLRKKQSEKMFSNDAIRFYAAELVLALEYLHDLGIVYRDLKPDNVMIQENGHIMLVDFDLSTKLKPKSPLQSLSQNSSDRSNSLKEKHAKKRLFSPFYRCNSGISPCDSDFESQQSVNSERKNESESVEKSKSFVGTEDYVAPEIVNGKGHGFEVDWWSLGVVLYEMLYGTTPFNGINRKETFYRILSKEPELTGEKTALRDLIRRLLEKDPNRRIKVDEIKGHDFFKGVKWDTVLQLARPPYIPPLIEVENEKTVGYSKNYVEVFVHEVFFPKGDDINEEKKNNKMGEKKGNGEEKRVWVDKLSSSLNEDDDFLIF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00338 434 Gene3D Transferase(Phosphotransferase) domain 1 244 363 - -
Trre16g00338 434 Gene3D Transferase(Phosphotransferase) domain 1 115 185 - -
Trre16g00338 434 FunFam Serine/threonine-protein kinase OXI1 115 183 - -
Trre16g00338 434 ProSiteProfiles Protein kinase domain profile. 20 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00338 434 Pfam Protein kinase domain 22 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00338 434 Pfam Protein kinase domain 228 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00338 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Trre16g00338 434 MobiDBLite consensus disorder prediction 232 247 - -
Trre16g00338 434 SMART serkin_6 20 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00338 434 PANTHER FLIPPASE KINASE 1-RELATED 12 370 - -
Trre16g00338 434 FunFam Serine/threonine-protein kinase OXI1 246 363 - -
Trre16g00338 434 Gene3D Phosphorylase Kinase; domain 1 20 114 - -
Trre16g00338 434 MobiDBLite consensus disorder prediction 228 247 - -
Trre16g00338 434 SUPERFAMILY Protein kinase-like (PK-like) 17 376 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00338 Trre-Chr16 2381058 2382515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00338 13 434 AGC Kinase Gene Family AT3G25250 57.075 1.63e-154 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre16g00338 Pkinase 3.7e-34 CL0016