Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00321 ATGGCTTCCTCTCTACTTCCCTTTCTCCTCTGCTCACTGATTCTTCAATCCAACTGTGTTGTAGCTCAAACTAAAAGTACCATAGCCATTGGTGATTCTTATACTGCGCAAACCAGCTCCTCTCCATGGTTGCTTTCGCCTTCTGGTGACTTTGCCTTTGGTTTTCTTGCACTTAAAGATACTACAGATCTTTTTTTACTTTCCATTTGGTATGAAAATATTTCTGACAAAACTGTTGTGTGGTATGCTAATGGAGATAATCCTGCACCAAAAGGGTCAAAAGTGGAAATAACTGCCAATGATGGGTTGGTGCTAACTTCTCCAAATGGTGACGCGTTATGGAATACTATTGAGGTACTCAGTGGTGGAGTTTTTCGCGGTGTGTTCAATGACACTGGCAACTTTGTCCTTGAGAATGCTAATTCCAAAAGTGTTTGGGAGACTTTCAAGTTTCCTAGTGACACCTTATTGCCTTCTCAAGTTGTTGAAAAAGGTGGAAGGCTTTCTTCAAGGCTTAAGGAGACAAATTTCAGTAAAGGAAGGTTTGAGCTTCTTTTACAAGGTAATGGTGATCTTGTTATGCATTCTATTAATTTACCATCTGGCTATGCTAATAAAGAAGCCTACTATCTTAGTAATACTTTTGGATCCAATACATCAAGTGCTGGAACTCAATTGGTCTTTGACAGATCAGGGTACTTGTATATCTTGGGCGAGAAGAGTGAGAAATTCAATTTGTCAGAAGTAGAGAGTAATGTCTCTACCACTGATTTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCATACTTTACAAACATCCAAAGAGTTCAACTGAGAGTCAAGGTTGGACCACAGTGTGGTCTCAACCTGATAATATATGTAGTTATATCACTGAATTTAGTAGTGGTGCTTGTGGATACAATAGCCTCTGCACTTTGGGAGATGATAAGAGACCAACATGTCAGTGTCCAAAAGGTAATTACTCACTGATTGATCCTGATGATCCATATGGTAGCTGCAAGGCAGATTTCATACAAGGATGTGAAGAGGACGAACTAAGTAAAAACATAAATGATCTCTATGACTTTGAGACTTTGAATAACATTGATTGGCCTTTGACAGATTATGTGCTTCAAAAACCTTTTACTGAAGAACAATGTCAGAAATCTTGTATGGAAGATTGTTTGTGTTCTGTGGCTATTTTCAGGTATGGTAATAGTTGTTATAAGAAGAAGTTACCACTGTCAAATGGGAGATTTGATGTAACACTTGATTCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACCTCCCTTGTACCTACAATTCCAATAATTGTGAACAAGAATAATAACAGACAAACTTTGGTTTTGGTTGGTTCTGCTATTCTTAATGTTGCATTTAGTGTAGCAATATGTGTCTGCATCTCCTTCATTTTTCAGTACAAGAAGAAGCTTAGAAGTGCTAGAAAAAGTGGCACTTTTGTTGAAATTGAATCCAATTTGCGTTGCTTCACATACGAAGAGCTTGAAAAAGCTACCAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATCAACACAGCTTCCAAAACTCGAGTGGCAGTGAAAAAGTTGAGCAGTTTTTTGTTGGATCAAGGTCATAGGGAATTCAGAAATGAACTAAATTCCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGCGTGGAAGTGAAAGATTGCTTGTTTACGAATACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGTTGTCGAGAAACAGAAACCAAGTTGGAAAGTAAGACTAGAAATTGCAATAGGGGTAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTGGGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTCGACGATTACTTCAATGCAAGAATTTCCGACTTCGGATTAGCCAAGATGTTAAACATGAATCAGAGCAAAACCAACACAGGCATAAAGGGAACAAGAGGGTATGTTGCCCTTGAATGGTTTAAAAACTTGCCTATCAATGCTAAGGTGGATGTGTATAGTTATGGAGTAGTATTACTTGAGATAATTACACTAAGAAGATGTGTTTTAGTAATGGATCAAGAAGATGAAGAGAAAGCTATACTAACCGATTGGGCATATGATTGCTACAAAGAAGGTTCTGTAGATGCATTGGTTGAGGGTGATAATGAGGCATTGGAGGACAAGGAAAAGTTGGAGAAATTGGTAATGATTGCTATTTGGTGTGTTCAAGAGGATCCATACCTTAGACCAACCATGAGAAGCGTGTTACTTATGCTTGAAGGTACCGTTGAAGTGCAAGTTCCACCATACCCCTCACCAATTAGTATTCAATATTCTCTAAATTTGTAA 2448 0.3811 MASSLLPFLLCSLILQSNCVVAQTKSTIAIGDSYTAQTSSSPWLLSPSGDFAFGFLALKDTTDLFLLSIWYENISDKTVVWYANGDNPAPKGSKVEITANDGLVLTSPNGDALWNTIEVLSGGVFRGVFNDTGNFVLENANSKSVWETFKFPSDTLLPSQVVEKGGRLSSRLKETNFSKGRFELLLQGNGDLVMHSINLPSGYANKEAYYLSNTFGSNTSSAGTQLVFDRSGYLYILGEKSEKFNLSEVESNVSTTDFYLRATLNFDGVFILYKHPKSSTESQGWTTVWSQPDNICSYITEFSSGACGYNSLCTLGDDKRPTCQCPKGNYSLIDPDDPYGSCKADFIQGCEEDELSKNINDLYDFETLNNIDWPLTDYVLQKPFTEEQCQKSCMEDCLCSVAIFRYGNSCYKKKLPLSNGRFDVTLDSKAFLKVRKDNTSLVPTIPIIVNKNNNRQTLVLVGSAILNVAFSVAICVCISFIFQYKKKLRSARKSGTFVEIESNLRCFTYEELEKATNGFDKELGRGAFGIVYEGVINTASKTRVAVKKLSSFLLDQGHREFRNELNSIGLTHHKNLVRLLGFCERGSERLLVYEYMSNGTLASFLFNVVEKQKPSWKVRLEIAIGVARGLVYLHEECITGIIHCDIKPQNILLDDYFNARISDFGLAKMLNMNQSKTNTGIKGTRGYVALEWFKNLPINAKVDVYSYGVVLLEIITLRRCVLVMDQEDEEKAILTDWAYDCYKEGSVDALVEGDNEALEDKEKLEKLVMIAIWCVQEDPYLRPTMRSVLLMLEGTVEVQVPPYPSPISIQYSLNL 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00321 815 SMART serkin_6 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00321 815 PIRSF SRK 1 814 IPR024171 GO:0004674
Trre16g00321 815 Pfam Protein kinase domain 520 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00321 815 ProSitePatterns Protein kinases ATP-binding region signature. 523 548 IPR017441 GO:0005524
Trre16g00321 815 CDD B_lectin 49 152 IPR001480 -
Trre16g00321 815 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Trre16g00321 815 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 804 - -
Trre16g00321 815 FunFam S-receptor-like serine/threonine-protein kinase 485 595 - -
Trre16g00321 815 Pfam D-mannose binding lectin 78 161 IPR001480 -
Trre16g00321 815 Gene3D Phosphorylase Kinase; domain 1 480 595 - -
Trre16g00321 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Trre16g00321 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 195 IPR036426 -
Trre16g00321 815 SMART blect_4 36 152 IPR001480 -
Trre16g00321 815 Gene3D - 153 294 IPR036426 -
Trre16g00321 815 SUPERFAMILY Protein kinase-like (PK-like) 502 807 IPR011009 -
Trre16g00321 815 Gene3D - 20 150 IPR036426 -
Trre16g00321 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 800 - -
Trre16g00321 815 Gene3D Transferase(Phosphotransferase) domain 1 596 800 - -
Trre16g00321 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 150 - -
Trre16g00321 815 ProSiteProfiles Protein kinase domain profile. 517 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00321 Trre-Chr16 2271591 2274038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00321 503 804 Receptor kinase-like Gene Family AT1G60800 40.881 1.55e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre16g00321 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00321 - - gmx:100815462 1054.28