Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00318 ATGGCTTCCTCTATGCTCACCTTTCTCCTCTACTCATTGATTCTTCAATCCATCAGTGTTGTTGTAGCTCAGACCAAAAGTACCATATCCATTGGTGATTCTTTTACTGCACAAACCAACAATCCTCAATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTTGACGATACTAATGATCTTTTCTTGCTTTCCATTTGGTATGCCAAAATATTTGAGAAAACTGTTGTGTGGTATGCTAATGGAGACACTCCTGCACCAAAAGGGTCAAAAGTGGAACTCACTTCCAGTGATGGTTTGATGCTAACTTCTCCAAATGGTGACATGTTATGGTATACTAAAGGACTCAATGAGGTTTTGAGTGACGATAGAGTTTTTCACGGTGTGTTCGATGACACTGGCAACTTTGTGCTTGAGAATGCTAATTTCAAAAGTGTCTGGGAGACTTTCAATTTTCCAAGTGACACCTTGTTGCCTTCTCAGGTTGTTGAAAAAGGTGGAAAGCTTTCTTCAAGGCTTAAGGAGACAAATTTCAGTAAAGGAAGGTTTGAGCTTCTTTTACAAAATGATGGTAACCTTGTTATGCATTCTATTAATTTACCATCTGGAAATGTTAATGAAAACTACTATGAAAGTAACACTGATGGAACTCAGATGGTCTTTGACAGATCAGGGTACATGTATGTTTTGGAAAAGAACAATGAGAAATACAACGTGTCAGAAGGAGAGACTAAAGTCTCTAACAATGACTTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCATACTTTACAAGCATCCAAAGAGTTCAACTGAGAGTGAAGGTTGGACCATAGTGTGGTCTACGCCTGATAATATATGTAATTATATTTCTAGAGCAGGTAGTGGTGTTTGTGGATATAATAGCTTCTGCACTTTGGGAGATGATAAGAGACCAAAATGTCAGTGTCCAAAAGGTTACTCACTGATTGATCCTAATGATCCATATGGTAGCTGCAAGCCAGATTTCATACAAGGATGCGCAGAAGATGAACTAAGTAAAGAAATAAATGATCTCTATGAGTTTGAGATTTTGATTGACATTGATTGGCCTTTGTCAGATTCTATACGTCAAAAGCCTTTTACTGAAGAACAATGTAAGAAAGCTTGTATGGAAGATTGCTTGTGTTCTGTGGCTATTTTCAGGGAAGGTGATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAATGGGAGAGTTGATCCAACTCTTAATGGTGCTAAGGCATTCTTGAAAGTGAGAAAAGAATGGAACAAGAATAATAATAATAATAATAGACAAACTTTGGTTTTGGTTGGTTCTGTGCTTTTTGGTAGCTCGGCTATTCTCAATGTTGTATTGCTTGTAGTAATCTGTGTCGGCACCTCCATTTTCCAGCACAAGAAGAAGCTTAGAAGAGTTAGAAAAAGCGACACTTGTGTTGAAGTTGAATCCAATTTGCGCTGTTTCACTTATGAAGAACTTGAAGAAGCTACAAATGGATTTGACAAAGAGCTAGGAAGGGGTGCTTTTGGAATTGTTTATGAAGGAGTCATCAACAACAACACATGTTCTGAAACATGCGTGGCAGTGAAAAAGTTAAACAGTTTTTTGTTGGATCAAGCTCATAGGGAATTCAGGAATGAACTGAATTCTATTGGTCTCACTCATCACAAGAACTTGGTTCGCTTACTTGGATTTTGTGAGTGTGGAAGTGAACGATTGCTTGTTTATGAGTACATGAGCAATGGAACTTTGGCAAATTTTCTTTTCAATTCTGATGAGAAACATAAACCAAGTTGGAAATTAAGGCTAGAAATTGCAACAGGGATAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCTCTAGGATCATCCACTGTGACATAAAGCCTCAGAACATTCTCCTTGATGATTACTTCAATGCACGAATTTCTGATTTTGGATTAGCCAAATTGTTGAACATGAATCAAAGCAAAACCAACACTGACATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCAATCACAGCTCAAGTGGATGTGTATAGTTATGGTGTAGTGCTGCTTGAGATAATATCATGTAGAAGATGTGTTGAAGAAATGGATCAAGAAGATGAAGAGAAGGCTATTTTAACTGATTGGGCTTATGATTGCTTCAGAGAAGGTTCTGTAGGTGCTTTGGTTAAGGGTGACAATGAGGCATTGGAGGACAAGGAAAAGTTGAAGAAATTGGTAATGATTGCGATTTGGTGTGTTCAAGAGGATCCATGTCTTAGACCAACAATGAGAAATGTGATCCATATGCTAGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACCAACTAGTATTTAA 2418 0.3805 MASSMLTFLLYSLILQSISVVVAQTKSTISIGDSFTAQTNNPQWLLSPSGDFAFGFLPLDDTNDLFLLSIWYAKIFEKTVVWYANGDTPAPKGSKVELTSSDGLMLTSPNGDMLWYTKGLNEVLSDDRVFHGVFDDTGNFVLENANFKSVWETFNFPSDTLLPSQVVEKGGKLSSRLKETNFSKGRFELLLQNDGNLVMHSINLPSGNVNENYYESNTDGTQMVFDRSGYMYVLEKNNEKYNVSEGETKVSNNDFYLRATLNFDGVFILYKHPKSSTESEGWTIVWSTPDNICNYISRAGSGVCGYNSFCTLGDDKRPKCQCPKGYSLIDPNDPYGSCKPDFIQGCAEDELSKEINDLYEFEILIDIDWPLSDSIRQKPFTEEQCKKACMEDCLCSVAIFREGDSCWKKKLPLSNGRVDPTLNGAKAFLKVRKEWNKNNNNNNRQTLVLVGSVLFGSSAILNVVLLVVICVGTSIFQHKKKLRRVRKSDTCVEVESNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINNNTCSETCVAVKKLNSFLLDQAHREFRNELNSIGLTHHKNLVRLLGFCECGSERLLVYEYMSNGTLANFLFNSDEKHKPSWKLRLEIATGIARGLVYLHEECISRIIHCDIKPQNILLDDYFNARISDFGLAKLLNMNQSKTNTDIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVEEMDQEDEEKAILTDWAYDCFREGSVGALVKGDNEALEDKEKLKKLVMIAIWCVQEDPCLRPTMRNVIHMLEGTVEVQVPPYPSPTSI 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00318 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 796 - -
Trre16g00318 805 PIRSF SRK 1 805 IPR024171 GO:0004674
Trre16g00318 805 SMART blect_4 36 157 IPR001480 -
Trre16g00318 805 SMART serkin_6 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00318 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 217 IPR036426 -
Trre16g00318 805 Gene3D - 157 293 IPR036426 -
Trre16g00318 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 23 155 - -
Trre16g00318 805 Pfam S-locus glycoprotein domain 235 327 IPR000858 GO:0048544
Trre16g00318 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Trre16g00318 805 Pfam D-mannose binding lectin 79 167 IPR001480 -
Trre16g00318 805 Gene3D Transferase(Phosphotransferase) domain 1 592 796 - -
Trre16g00318 805 ProSiteProfiles Protein kinase domain profile. 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00318 805 ProSitePatterns Protein kinases ATP-binding region signature. 517 544 IPR017441 GO:0005524
Trre16g00318 805 ProSiteProfiles Bulb-type lectin domain profile. 20 155 IPR001480 -
Trre16g00318 805 FunFam S-receptor-like serine/threonine-protein kinase 479 591 - -
Trre16g00318 805 Gene3D Phosphorylase Kinase; domain 1 473 591 - -
Trre16g00318 805 Pfam Protein tyrosine and serine/threonine kinase 513 788 IPR001245 GO:0004672|GO:0006468
Trre16g00318 805 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 800 - -
Trre16g00318 805 Gene3D - 21 155 IPR036426 -
Trre16g00318 805 SUPERFAMILY Protein kinase-like (PK-like) 490 799 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00318 Trre-Chr16 2257430 2259847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00318 497 800 Receptor kinase-like Gene Family AT1G60800 39.252 3.57e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre16g00318 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00318 - - gmx:100776632 1062.75