Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00316 ATGGCTTTCTCTTTACTTTACTTTCTCCTCTACTCACTGATTCTTCAATCCATCAGTGTTGTAGCTCAAAACAAAAGTACTATAGCCATTGGTGATTCTTTTACTGCACAAACAAACAACTCTACATGGTTACTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTGTTCCACTTGAAGACACTGATCTTTTTTTGCTTTCCATTTGGTATGCCAAAATTTCTGATAAAACTGTTGTGTGGTATGCTAATAGAGACAGTCCTGCACCAACAGGGTCAAAAGTGGAACTGGATGCAAATGATGGCTTGGTGTTAACTTCTCCATATGGTATCCAGTTGTGGAAAACCGAAGGACTCAATGCTAAGGTTTCTCGCGGTGTGTTTAATGACACCGGCAACTTTGTGCTTAAGGGTGATAAACTCAACAGTGTTTGGGAGACTTTCCAGTTTCCTAGTGACACCTTGTTGCCTACTCAGGCTCTTCAAAAAGGTGGAAAGCTTTCTTCAAGGCTTAAGGAGACAAATTTCACTAAAGGAAGGTTTGAGCTTCTTTTACAAAATGATGGTAATCTTGTTATGCATTCTATTAATTTACCATCTGGTAATGTTAATGAAAACTACTATGAAAGTAAAACTGTTGGATCCAATACATCAAGTGCTGGAACTCAATTGGTCTTTGACAGATCAGGGTACTTGTATGTTTTGGGAGAGAACAATGAAAAATACAATGTGTCAGAAGAAGAGAGTAAAGTCTCTACCACTGATTTTTATCTTAGAGGAACTCTTAATTTTGATGGAGTGTTCACACTTTACAAGCATCCAAAGAGTTCAGCTGAGAGTGAAGGCTGGACCATAGTGTGGTCTAAACCTGATAATATATGTAATCATGTTGATAGTGAAGGGAGTGGTGTTTGTGGATATAATAGCTTCTGCACTTTGGGAGATGATAAGAGACCAATATGTCAGTGTCCGAGACGCTACTTACTTGTTGACCCCGATGATCCAAATGGTAGCTGCAAGCCAGACTTCATACAAGGATGTGCAGAAGATGAACTAAGTAAAAGGAAAGATCTCTATGACTATGTGATTTTGATTGACACTGATTGGCCTATGGCAGATTCTGTGCTTCAAAAGCCTTTTACTGAAGAAGAATGTAAGAAATCTTGTATGGAAGATTGCTTTTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGCTGGAAGAAGAAATTACCACTCTCAAATGGAAAAGTTGATAAAACTCTTAATGGTGCTAAGGCGTTCTTGAAAGTGAGAAAAGATAATTATACCTCCTTTGTTGTTCCTCCAAATCAAATCATTGTGAACAAGAATAATAATAGGGAAACTTTGGTTTTGGTTCTTTCTGTGCTTTTTAGTAGCTCTGCTATTCTCAATGTTGCATTCGTTGTTGCAATATGTGTCAGCGCCTCCTTCATTTTTCAGTACAAGAAGAAGCTTAGAAGTGCTAGCAAAAGTGGCAATTTTGTTGAAGTTGAGTCCAATTTGCGTTGCTTCACATACGAAGAGCTTGAAGAAGCTACCAATGGATTTTACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTCTATGAAGGAGTCATCAACACAGGTTCCAGAACTCGTGTTGCAGTGAAAAAGTTGAACAACTTTCTGTTGGATCAAGCTCATAGGGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTTCATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGATGAGATACAGAAACCAAGTTGGAAACTAAGGCTAGAACTTGCAATAGGAGTAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTAGGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGATTAGCCAAATTGTTGAATATGAATCAAAGCAAAACCAACACTGGCATAAAGGGAACAAGAGGGTATGTTGCCCTTGAATGGTTTAAAAACTTGCCTATCAATGCTAAGGTGGATGTGTATAGTTATGGAGTAGTACTACTTGAGATAATTTCATGTAGAAGATGTGTTGAAGAAATGGAGCAAGAAGATGAAGAGAAAGCTATCTTAACTGATTGGGCTTATGATTGCTACAAAGATGGTGCTGTAGATGCATTGGTTGAGGGTGACCATGAAGCATTGGCAGACAAGGAAAAGTTGGAGAAATTGGTAATGATTGCTATTTGGTGTGTTCAAGAGGATCCATGTCTTAGACCAACCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCCAGTTCCGCCATACCCCTCACAAATTAGTTTTCAATATTCTATAAATTAA 2454 0.3835 MAFSLLYFLLYSLILQSISVVAQNKSTIAIGDSFTAQTNNSTWLLSPSGDFAFGFVPLEDTDLFLLSIWYAKISDKTVVWYANRDSPAPTGSKVELDANDGLVLTSPYGIQLWKTEGLNAKVSRGVFNDTGNFVLKGDKLNSVWETFQFPSDTLLPTQALQKGGKLSSRLKETNFTKGRFELLLQNDGNLVMHSINLPSGNVNENYYESKTVGSNTSSAGTQLVFDRSGYLYVLGENNEKYNVSEEESKVSTTDFYLRGTLNFDGVFTLYKHPKSSAESEGWTIVWSKPDNICNHVDSEGSGVCGYNSFCTLGDDKRPICQCPRRYLLVDPDDPNGSCKPDFIQGCAEDELSKRKDLYDYVILIDTDWPMADSVLQKPFTEEECKKSCMEDCFCSVAIFRLGDSCWKKKLPLSNGKVDKTLNGAKAFLKVRKDNYTSFVVPPNQIIVNKNNNRETLVLVLSVLFSSSAILNVAFVVAICVSASFIFQYKKKLRSASKSGNFVEVESNLRCFTYEELEEATNGFYKELGRGAFGIVYEGVINTGSRTRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEFMSNGTLASFLFNDEIQKPSWKLRLELAIGVARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLLNMNQSKTNTGIKGTRGYVALEWFKNLPINAKVDVYSYGVVLLEIISCRRCVEEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDHEALADKEKLEKLVMIAIWCVQEDPCLRPTMRNVIHMLEGTVEVPVPPYPSQISFQYSIN 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00316 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 210 IPR036426 -
Trre16g00316 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 807 - -
Trre16g00316 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 148 - -
Trre16g00316 817 SMART serkin_6 521 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00316 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Trre16g00316 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Trre16g00316 817 CDD B_lectin 38 150 IPR001480 -
Trre16g00316 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Trre16g00316 817 Gene3D Transferase(Phosphotransferase) domain 1 600 801 - -
Trre16g00316 817 ProSitePatterns Protein kinases ATP-binding region signature. 527 552 IPR017441 GO:0005524
Trre16g00316 817 Gene3D - 19 149 IPR036426 -
Trre16g00316 817 FunFam Uncharacterized protein 150 280 - -
Trre16g00316 817 FunFam S-receptor-like serine/threonine-protein kinase 489 599 - -
Trre16g00316 817 SUPERFAMILY Protein kinase-like (PK-like) 499 809 IPR011009 -
Trre16g00316 817 Pfam Protein tyrosine and serine/threonine kinase 523 795 IPR001245 GO:0004672|GO:0006468
Trre16g00316 817 SMART blect_4 35 150 IPR001480 -
Trre16g00316 817 Pfam D-mannose binding lectin 77 161 IPR001480 -
Trre16g00316 817 ProSiteProfiles Protein kinase domain profile. 521 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00316 817 ProSiteProfiles Bulb-type lectin domain profile. 30 148 IPR001480 -
Trre16g00316 817 Gene3D - 150 280 IPR036426 -
Trre16g00316 817 Gene3D Phosphorylase Kinase; domain 1 483 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00316 Trre-Chr16 2253673 2256126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00316 507 797 Receptor kinase-like Gene Family AT1G60800 40.678 2.64e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre16g00316 PK_Tyr_Ser-Thr 8.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00316 - - gmx:100815462 1135.55