Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00273 ATGAGTGGGGGATCACACGAAGAAGGACCCGATTTGAAATTTACTCCGACATGGGTTGTTGCCCTCGTTTGCACCATCTTCCTCTTCGTTTCCTACGGCATTGTACGTTCTCTTCATTATTTTGGCAAGTTTCTTTTGAGGAAAGAGCAGAAACCACTCTATCAAGCCTTGCAAAAAATCAAACAAGAGTTTATGCTGGTGGGTTTTATGTCATTGTTTTTAACTGTGACACAAAATGGGATCACAAAAATCTGTGTTCCAAAAAGTTGGTATCGTCATATGCTTCCTTGTGGACTTGACGAAAAGAAAAGTGAAGAAGAACATTTGACAAAACCACCACCCACTTCACATTTTCAGACTTATTTCTCTTCCAACAACGATGTTCTCGACAATGCTAGGCTCCTTCTTGACATTGACACCGATGGTCGTCTTCCATTCTTAGAAGAAATACCTGGATTTTGTGCTGCCAAGGGCAAGCTGCCTCTATTATCTGTGGATGCACTGCATCACCTGCATGTCTTCATTTTTGTTCAAGCTGTTACTCATGTGGCCTTATGTATTTTGACTATTGGTTTTGTAGGATTAATTATTCGTCGTTGGGAGCGCTGGGAAGAGTCTGTTACAAACGAAGACAATGAATCACAAGAAAGGACAATTGCTCATGCTCATCATCGCGAATTTATAAAAGATCGTGGAAAACATTCTTCTTTCATGGGATGGTTGAAATCATTTTTCAAGCAATTTTATGGATCTGTGACACAGTTGGATTATGTTGCATTAAGACATGGTTTCATTATGACTCATTGTAGGGGACATCCAAAGTTTAATTTTCATAAGTATGTGAACCGTGCACTTGAAGATGATTTCAAGAGAATTGTTGGCATTAATTGGTATCTTTGGTTCTTTGTGGTCGTTTTTTTGTTGCTTAATATCAATGGTTGGCACACATACTTTTGGATTTCTTTCATTCCTTTCCTTCTTCTATTTGCTGTTGGAACTAAGCTGGAACATGTAATAATTCAATTAGCAAATGAAGTAGCTGATAAAAATTCACAACAATGTGGATTAATTGTTCAACCATCAGATGATCACTTCTGGTTTCATCGTCCTCGCATCGTCCTCTACTTGATTCACTTGATTCTTTTCCAAAATTCTTTTGAGATAGCATATTTTTTCTGGATACTGGTAACATATGGCTCTGATACATGTATAATGGGACAATTTACTTACATTCTTCTAAGGCTCATTATTGGGGCATTAATTCAGATACTATGTAGTTTTAGTATCCTACCACTATATGCAATTGTTACTCAGATGGGAACTCACTTTAAGAATGTGATATTTAATGAGCAAATACAAGAAAGACTTATTGGTTGGGCACAAAAGGCAAAGAGGAGAGCAAGTGATAATCATAATGCCCAATCCTCTGTGGAAGCAAGTCCTCATCATCATAATGGTGCAAGTCAATCTGGGGATACAAGTCCTTATACTGGTACAAATTCAAGTTCAACTGTTGACATTGAGCTAGGTTCACTTGACTTGTTACTTAGTTGGAAGTTCCATCATCGGAGACGCCGTGGATTGATGGAGCCAACCAATCGCATAACGATAACCGTCAAAGACACGGATGGGATTAAAAAAAATTTTTTTAGTATTAATAGAAATACTCAAATGAAGAAGGTTATGAATTCTTACTGTTCTCATCATTTTGACTCAATCGCTTTTCTTTTTAATGGCCGTCGCATTTGGCCAGATCAGACTCCATATCAGCTGGACATGGAAGATGGGGATAAAATAGAGGCTGCCTTGTATGAACATTGGACAGCATGCATCAATATCGATGTCAAAGGCCAGGTTGGGTTTGAAGCTTCCTACAGCTTCCGAAGAAACTATCCATTGAAAAAACTTATGGCTGAATATTGCAAACAATATCATCTGGATGTTAGTCAAGTTGGTTTTCTGTTTGACGAGCGTCTCGTCCAAGCTGAGCAGACTCCACACGAGCTGGGAATTGAAGATGGCGATGAAATGCTTGTCATGCTTCATCTGAGAAGAAGATATGTTTAG 2067 0.3851 MSGGSHEEGPDLKFTPTWVVALVCTIFLFVSYGIVRSLHYFGKFLLRKEQKPLYQALQKIKQEFMLVGFMSLFLTVTQNGITKICVPKSWYRHMLPCGLDEKKSEEEHLTKPPPTSHFQTYFSSNNDVLDNARLLLDIDTDGRLPFLEEIPGFCAAKGKLPLLSVDALHHLHVFIFVQAVTHVALCILTIGFVGLIIRRWERWEESVTNEDNESQERTIAHAHHREFIKDRGKHSSFMGWLKSFFKQFYGSVTQLDYVALRHGFIMTHCRGHPKFNFHKYVNRALEDDFKRIVGINWYLWFFVVVFLLLNINGWHTYFWISFIPFLLLFAVGTKLEHVIIQLANEVADKNSQQCGLIVQPSDDHFWFHRPRIVLYLIHLILFQNSFEIAYFFWILVTYGSDTCIMGQFTYILLRLIIGALIQILCSFSILPLYAIVTQMGTHFKNVIFNEQIQERLIGWAQKAKRRASDNHNAQSSVEASPHHHNGASQSGDTSPYTGTNSSSTVDIELGSLDLLLSWKFHHRRRRGLMEPTNRITITVKDTDGIKKNFFSINRNTQMKKVMNSYCSHHFDSIAFLFNGRRIWPDQTPYQLDMEDGDKIEAALYEHWTACINIDVKGQVGFEASYSFRRNYPLKKLMAEYCKQYHLDVSQVGFLFDERLVQAEQTPHELGIEDGDEMLVMLHLRRRYV 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00273 688 Gene3D - 610 684 - -
Trre16g00273 688 ProSiteProfiles Ubiquitin domain profile. 611 686 IPR000626 GO:0005515
Trre16g00273 688 MobiDBLite consensus disorder prediction 470 499 - -
Trre16g00273 688 Pfam Mlo family 11 485 IPR004326 GO:0006952|GO:0016020
Trre16g00273 688 PANTHER MLO-LIKE PROTEIN 1 11 499 IPR004326 GO:0006952|GO:0016020
Trre16g00273 688 SUPERFAMILY Ubiquitin-like 527 602 IPR029071 -
Trre16g00273 688 Pfam Ubiquitin-2 like Rad60 SUMO-like 535 601 IPR022617 -
Trre16g00273 688 Pfam Ubiquitin-2 like Rad60 SUMO-like 611 680 IPR022617 -
Trre16g00273 688 MobiDBLite consensus disorder prediction 472 499 - -
Trre16g00273 688 Gene3D - 534 602 - -
Trre16g00273 688 SMART ubq_7 535 604 IPR000626 GO:0005515
Trre16g00273 688 SMART ubq_7 611 684 IPR000626 GO:0005515
Trre16g00273 688 SUPERFAMILY Ubiquitin-like 610 683 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00273 Trre-Chr16 1894211 1902196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00273 4 481 MLO family AT4G02600 55.556 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00273 K08472 - gmx:100787826 620.157