LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g00268	ATGGATGAAGATCAAGAGATGGAGAAATTCGGAATGGAGAACGATTTCGAAGGTGGCGAATGGGTTGGTGGTGAATTCTACTATCGGAAGCAAAGAGAGAAGCGACATCAAACCAAAGAGGATGTTCTCTATGGAGTTTTTGCGGATTCTGAAGACGACGATGATGATGAGTATTCTAGTAGAAAGCGAAGAAAAGGCCGTGATTTTTCGAAGAAACAGGACCTCACTAAACCGGTGAATTTCGTTTCTACTGGAAATTTTATGCCTAATCAAGATAATGTTAATGAGAATTTGAAAGAAAAAGATGAGAGTGATAGTTATGTTGATGAAGATAGGCCTGGTTTAGGTGCAGGTCTTGGTTTTGGGTCTGCCAGCACGTCGGGGTCTGGCTTAGGTTTTAATTCTGGTCGTGCTGCTGTGAATGGTTCTCATAGGAATGATGAATCTGATGAGAATGATAATGGCGATGATAAGTTTTTGCCTACTGCGTTTGGGAAGAAGATTAAGGAGGGAGCAATGAGGAGGGAGAAGGAGAGATTGGAGAACAAGAAGAAGGTGCAGAAGCAGAAGCCTGGTCTAGGTCAGGGGGGATCTGTGGATGTTGGGACTTTTGAGACTCATACGAAGGGAATTGGAATGAAGCTGTTGGAGAAGATGGGTTATAAAGGTGGTGGTCTTGGGAAGAATGAGCAGGGTATTTTGAATCCTATTGAGGCGAAATTAAGGGCTAAGAATTCTGGTCTTGGATTTAATGAATCGAAGAAGACTACAACGCCATTGCCCGCTTTGCAGACTGAAAAGAAGAGTGCACCGGGAGGAGATGTACAGCCTACAGTTGGAAGATCGAGAGAACGTTCATGGTTAAAGCAGTTGAAGAAAAAGAAAAAAGAAGAGTATGTAACTGCTGAAGAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCAGAGGTTGTTCAGAAGATTTATGATATGCGGGGGCCGCAGGTACGAGTGTATACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAGAGGATGTCCCAATGCCTGAGCTTCAGCATAACGTAGCACTAATAGTTCGGTTGGCTGAGGCTGACATCCAAGAGATTGATAGAGATTTGAGAAAAGAGAGGGATATAGCACTTAGCTTGAAAAAAGAAAAAGAGAACTTGGAAGCTGAGGCATCATTTCAAAAGAGTCAGCTGGATAATTATGAGAAAATAATGAGTGTGCTGGACCGAGTTGGAGAAGAGAACACCTCAGGAACATTAACATTGGACTCCCTTGCTCAATGCTTTAGAGACATGAACAGAAGATATCCTGAGGAATATAAGTTGTGTAACTTGTCATGCATTGCTTGTTCATATGCTCTACCTTTGTTTATCAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCTTCTCATGGTTTGGAGTTGGTATCACAGTGGAAGGCATTGCTTCAAGGTGATGATTGTTTTGATATTTGGGACACATCGTCACCTTATACGCACTTGGTTTCAGAGGTTGTATTACCAGCTGTTAGAATATCTGGTATCAATACCTGGCATGCACGGGATCCTGAGCCGATGCTAAGGTTTTTGGAGTCATGGGAAAATTTGCTTCCTTCTTCAGTTCTTGCTACTATATTAGACAACATAGTCATGCCAAAACTATCAAGTGCCGTAGGTACTTGGGAACCACATCTTGAGACCATTCCTATCCACACATGGGTCCATCCATGGCTACCTTTGCTAGGGAACAAATTGGAGGGTATCTACCAGACGATTCGTTTCAAATTGAGTACTGTTCTTGATGCGTGGCATCCAAGTGATGGTTCTGCATATGCCATATTGTCCCCTTGGAAGACTGTATTTGATTCTGATAGTTGGCAACAACTTATGCACCGTTTTATTGTACCAAAGCTGAAGGCTGTATTTGTATCTGATGACTTTCAAGTGAACCCGGCAAGTCAGAAACTTGATCAGTTTCATTGGGTAATGAACTGGGCTTCAGCTATCCCAGTTCATCTGATGGTTGACACGATGGAGATATTCTTTACCAAGTGGCTTACAGTTTTGTATCGTTGGTTGTGCTCAAATCCTAACTTTGATGAAGTTACGAAATGGTATTTGGGCTGGAAAGAACTTATTCCAAAAGAACTTTTGGCAAATGAAATTATTCGATACAAGCTCAATTGTGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTTGTGCAACCTGGTTTGAAGGAGAAGATAAGCTATATCAGAGTTAGTGAGCAGAGGAAATTTGAGACTCAGCAGAAAGCAGCGGCCTCTGCTCAACAACAGGCTTCTGTCAATGCAGATGGTGCGAATGAAATGAGCGTGAAAGAAACCGTTGAAGCCTATGCTCGGGATCATGGTTTACTGTTCAAACTTAAACCTGGTAGAATGCATAACGGCCATCAAATATATGGGTTTGGCAATGTCAGCATAATAATTGATTCTCTAAATCAAAAGGTCTATGCCCAAAATGAGGAGACATGGTCTTTAGAAACTCTTGAGCGATTGCTAGAGTTACACAATAGATCTCTTAGTAAAAGGCGCTGA	2607	0.4212	MDEDQEMEKFGMENDFEGGEWVGGEFYYRKQREKRHQTKEDVLYGVFADSEDDDDDEYSSRKRRKGRDFSKKQDLTKPVNFVSTGNFMPNQDNVNENLKEKDESDSYVDEDRPGLGAGLGFGSASTSGSGLGFNSGRAAVNGSHRNDESDENDNGDDKFLPTAFGKKIKEGAMRREKERLENKKKVQKQKPGLGQGGSVDVGTFETHTKGIGMKLLEKMGYKGGGLGKNEQGILNPIEAKLRAKNSGLGFNESKKTTTPLPALQTEKKSAPGGDVQPTVGRSRERSWLKQLKKKKKEEYVTAEELLASKQEEDSEVVQKIYDMRGPQVRVYTNLSDLNAEEKAKEEDVPMPELQHNVALIVRLAEADIQEIDRDLRKERDIALSLKKEKENLEAEASFQKSQLDNYEKIMSVLDRVGEENTSGTLTLDSLAQCFRDMNRRYPEEYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKALLQGDDCFDIWDTSSPYTHLVSEVVLPAVRISGINTWHARDPEPMLRFLESWENLLPSSVLATILDNIVMPKLSSAVGTWEPHLETIPIHTWVHPWLPLLGNKLEGIYQTIRFKLSTVLDAWHPSDGSAYAILSPWKTVFDSDSWQQLMHRFIVPKLKAVFVSDDFQVNPASQKLDQFHWVMNWASAIPVHLMVDTMEIFFTKWLTVLYRWLCSNPNFDEVTKWYLGWKELIPKELLANEIIRYKLNCGLDMMNQAVEGMEVVQPGLKEKISYIRVSEQRKFETQQKAAASAQQQASVNADGANEMSVKETVEAYARDHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEETWSLETLERLLELHNRSLSKRR	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	56	74	-	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	76	94	-	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	95	110	-	-
	Trre16g00268	868	Pfam	G-patch domain	208	249	IPR000467	GO:0003676
	Trre16g00268	868	Coils	Coil	170	190	-	-
	Trre16g00268	868	Pfam	Tuftelin interacting protein N terminal	4	107	IPR022159	-
	Trre16g00268	868	ProSiteProfiles	G-patch domain profile.	208	253	IPR000467	GO:0003676
	Trre16g00268	868	PANTHER	TUFTELIN-INTERACTING PROTEIN 11-RELATED	1	856	IPR045211	GO:0000390
	Trre16g00268	868	Coils	Coil	292	312	-	-
	Trre16g00268	868	Pfam	GC-rich sequence DNA-binding factor-like protein	427	695	IPR022783	-
	Trre16g00268	868	PIRSF	TFIP11	1	863	IPR024933	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	122	142	-	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	248	284	-	-
	Trre16g00268	868	SMART	G-patch_5	206	251	IPR000467	GO:0003676
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	32	204	-	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	143	188	-	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	249	264	-	-
	Trre16g00268	868	MobiDBLite	consensus disorder prediction	32	46	-	-
	Trre16g00268	868	Coils	Coil	375	409	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g00268	Trre-Chr16	1848490	1851096	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g00268	197	267	C2H2 Transcription Factor Family	AT5G26610	40.845	7.24e-08	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g00268	K13103		-	gmx:100781621	1318.52