Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00267 ATGGAGAAAAAAATCATAGAACACAAAACTGTTACCAAAAAGCTTGTGAAACCTGGTTTCATGTCTTCTTTCATTCCAAAAACAATTAGAGTCACAGTTACTGATAATGATGCCACTGATTCTTCAAGTGAAGATGAAGGTTTCAAGAATGGTTTTCTTCAAAAAATAACAAGAAAATCAGTGAAAGAGATAAGGTTTCAAGAATGTTCTACTCTTCCTGCTAACAAGAACAACAAAAAAAAGAAACAACAGAATGGTGGTGTTATTGGTGAATGTTGTTTGAAACAGAACAATGATAAGGATAAAGATATAAACAATGTTGTTCATCAGAAGTTTCGCGGGGTTAGGCGTCGACCGTGGGGGAGATGGGCGGCCGAGATTCGCGATCCATGGCTTCGAAGGCGAAAATGGTTAGGTACTTTTGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAGGGCTGCAATTGATTATAGAGGTGCTGATGCTATTACAAATATTATCAAACCGCCACAAAAACATCAACAACAACAACAACAACAACAGAATGTTTGTGACAAAAATGTTGTTAATGATTGTGTTGAGTGTGATGATGATAACAACAAAGAAGAAGAATGTAATGGTAGTTCATCATGTTCATCTGGTATTGAAATTTGGAGTGAAAAGATGAATGATCAAGAATGGATTAAAGAGATAAGTGGTGAGAAATATTTGGATTTGGATGATGGTTTTATGTTTGATGATTCATTTGGTTCTTCTAATGAACCTTTTATTAATACAATGGTTTCTGATGAGAGTGAATGCATTATTGATAATATTCCTTTTCATCTTGAAGAAGATTTTGAATCATGTAAATGGGAAGTTGATAATTACTTCAATGACCCTTTTTCAATGCATTGA 900 0.3433 MEKKIIEHKTVTKKLVKPGFMSSFIPKTIRVTVTDNDATDSSSEDEGFKNGFLQKITRKSVKEIRFQECSTLPANKNNKKKKQQNGGVIGECCLKQNNDKDKDINNVVHQKFRGVRRRPWGRWAAEIRDPWLRRRKWLGTFDTAEEAALVYDRAAIDYRGADAITNIIKPPQKHQQQQQQQQNVCDKNVVNDCVECDDDNNKEEECNGSSSCSSGIEIWSEKMNDQEWIKEISGEKYLDLDDGFMFDDSFGSSNEPFINTMVSDESECIIDNIPFHLEEDFESCKWEVDNYFNDPFSMH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00267 299 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Trre16g00267 299 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Trre16g00267 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 222 - -
Trre16g00267 299 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Trre16g00267 299 CDD AP2 110 166 IPR001471 GO:0003700|GO:0006355
Trre16g00267 299 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Trre16g00267 299 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Trre16g00267 299 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Trre16g00267 299 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00267 Trre-Chr16 1841876 1842775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00267 4 189 AP2-EREBP Transcription Factor Family AT4G27950 40.513 1.42e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g00267 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00267 - - tpra:123886940 436.417