Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00249 ATGGTTCTTGTTCTAAGTAGCTGGATTTTCAGTGTTCATGTTTTTGTTAGTTTCTTGTTGCTGATTAGTTGTGGAATAATCTATGGGACTGAAACGGATATCTTGTGCTTGAAAAATATAAAAAAGTCCATCCAAGACCCGAATAATTATTTGACATCTTCATGGAATTTCAACAATAATACCGAAGGGTATATTTGTAGATTTAATGGCGTCGAATGTTGGCATCCTGATGAGAATAGAGTCTTGAATCTCAAATTGTCAAATATGGGACTTAAGGGTCAGTTTCCACGAGGCATTATTAATTGTTCAAGCTTAACTGGATTAGATCTTTCGGTCAATGATTTCTCTGGATCAATTCCAGCTGATATATCTTCGCTTGTATCATTTGTAACATCGCTTGATCTATCTTCGAATGCATTTTCTGGGGAGATACCTGGTAGTCTTGCAAATTGTACTTATTTGAACAGCCTTAAACTTAATAAGAACCAACTCACCGGTCAAATTCCTCTACGATTAGGCACTCTCGCACGTCTTAAGTCGTTTGATGTATCCGACAATCTTTTGACTGGGCAAATTCCAAACTTCACTATTGGTCACGTTACTGTAAATTATGCAAATAATCAAGGTCTTTGTGGAGGTTCATTGGGGATTTGCAAGGCCAATGCTTCCTCGAAAAGTAACACCGCGGTTATAGCTGGAGCAGCTGTTGGTGCGGTGACTCTTGCAGCGTTAGGATTGGGTGTTGTAATGTTCTTCTTTGTGCGCCGTGCTGCTTATAGGAAGAAGGAAGAAGACCCTGAAGGAAACAAATGGGCAAGAAGTCTTAAAGGAACTAAGGCAATTAAGGTATCTCTATTTGAGAAATCAGTTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAAATTCAGCAATAGCAATATCATTGGGACAGGAAGAACAGGAACTGTTTACAAAGCTACTCTTGAGGACGGAACGGCATTTATGGTGAAAAGATTGCAGGAATCTCAACACTCTGAGAAAGAATTTATGTCTGAGATGGCGACACTAGGGAGTGTCAAACATCGTAATCTGGTTCCTCTTTTAGGTTTTTGCGTGGCCAAAAAGGAGAGGCTTTTGGTCTTTAAAAACATGCCGAATGGAATGCTCCATGATCACCTACATCCGGCTGTTGGCGAGTGCACCCTTGACTGGCCTTCAAGACTCAAAATTGCAATCAGTGCGGCCAAAGGATTAGCATGGCTTCATCATAGTTGCAATCCCCGTATCATTCACCGAAACATAAGCTCTAAGTGCATCTTGCTAGACGAAGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCCAGATTGATGAATCCCCTCGATACACATTTAAGTACTTTCGTAAATGGTGAATTCGGCGATTTTGGTTATGTGGCTCCTGAGTATACAAAAACACTGGTCGCTACGCCTAAGGGTGATGTTTTCAGCTTTGGGACTGTGCTTCTTGAGTTGGTGACGGGCGAAAGACCTGCAAATGTGTCTAGAGCGCCAGAAACTTTTAAAGGAAATCTTGCAGAATGGATTGCTGAGCTCACAAGCAACTCGGAACTCCAGAATGCCATTGACGAATCACTAGTTAACAAGGGTGATGATAACGAGCTTTTCCAATTTTTAAAGGTTGCATGCAACTGTGTTTCACCAAATCCAAAGGAGAGGCCAACCATGTTCGAAGTATATCAGTTTTTAAGAGCTATTGGTGGTAAGTACAATTTCACAACTGAGGATGAAATATTGGTACCTGAAGATATCAGTGCTAATAACATGGATGAACTTATTGTTGCTAGAGAAGGAAAATAA 1848 0.4037 MVLVLSSWIFSVHVFVSFLLLISCGIIYGTETDILCLKNIKKSIQDPNNYLTSSWNFNNNTEGYICRFNGVECWHPDENRVLNLKLSNMGLKGQFPRGIINCSSLTGLDLSVNDFSGSIPADISSLVSFVTSLDLSSNAFSGEIPGSLANCTYLNSLKLNKNQLTGQIPLRLGTLARLKSFDVSDNLLTGQIPNFTIGHVTVNYANNQGLCGGSLGICKANASSKSNTAVIAGAAVGAVTLAALGLGVVMFFFVRRAAYRKKEEDPEGNKWARSLKGTKAIKVSLFEKSVSKMKLSDLMKATNKFSNSNIIGTGRTGTVYKATLEDGTAFMVKRLQESQHSEKEFMSEMATLGSVKHRNLVPLLGFCVAKKERLLVFKNMPNGMLHDHLHPAVGECTLDWPSRLKIAISAAKGLAWLHHSCNPRIIHRNISSKCILLDEDFEPKISDFGLARLMNPLDTHLSTFVNGEFGDFGYVAPEYTKTLVATPKGDVFSFGTVLLELVTGERPANVSRAPETFKGNLAEWIAELTSNSELQNAIDESLVNKGDDNELFQFLKVACNCVSPNPKERPTMFEVYQFLRAIGGKYNFTTEDEILVPEDISANNMDELIVAREGK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00249 615 Gene3D Phosphorylase Kinase; domain 1 266 378 - -
Trre16g00249 615 Gene3D Ribonuclease Inhibitor 30 218 IPR032675 -
Trre16g00249 615 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 380 592 - -
Trre16g00249 615 ProSiteProfiles Protein kinase domain profile. 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00249 615 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Trre16g00249 615 Pfam Protein tyrosine and serine/threonine kinase 308 579 IPR001245 GO:0004672|GO:0006468
Trre16g00249 615 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 266 379 - -
Trre16g00249 615 SUPERFAMILY L domain-like 31 204 - -
Trre16g00249 615 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 83 581 - -
Trre16g00249 615 SUPERFAMILY Protein kinase-like (PK-like) 284 579 IPR011009 -
Trre16g00249 615 FunFam Leucine-rich repeat receptor-like protein kinase 30 194 - -
Trre16g00249 615 CDD STKc_IRAK 311 579 - -
Trre16g00249 615 Gene3D Transferase(Phosphotransferase) domain 1 380 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00249 Trre-Chr16 1734597 1737120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00249 15 593 Receptor kinase-like Gene Family AT3G28450 45.205 1.33e-176 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre16g00249 PK_Tyr_Ser-Thr 4.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00249 - - psat:127076602 1065.45